Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH15_RS16700 Genome accession   NZ_CP126109
Coordinates   3164962..3167262 (-) Length   766 a.a.
NCBI ID   WP_283895613.1    Uniprot ID   -
Organism   Fictibacillus enclensis strain TL11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3159962..3172262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH15_RS16680 (QNH15_16680) - 3162839..3163921 (-) 1083 WP_283889390.1 AI-2E family transporter -
  QNH15_RS16685 (QNH15_16685) - 3164031..3164216 (-) 186 WP_283889391.1 hypothetical protein -
  QNH15_RS16690 (QNH15_16690) - 3164227..3164424 (-) 198 WP_283889392.1 hypothetical protein -
  QNH15_RS16695 (QNH15_16695) - 3164448..3164918 (-) 471 WP_283889393.1 PRC-barrel domain-containing protein -
  QNH15_RS16700 (QNH15_16700) recD2 3164962..3167262 (-) 2301 WP_283895613.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH15_RS16705 (QNH15_16705) - 3167308..3167949 (-) 642 WP_283889394.1 tetratricopeptide repeat protein -
  QNH15_RS16710 (QNH15_16710) mnmA 3168056..3169180 (-) 1125 WP_283889395.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH15_RS16715 (QNH15_16715) - 3169218..3170357 (-) 1140 WP_283889396.1 cysteine desulfurase family protein -
  QNH15_RS16720 (QNH15_16720) - 3170382..3170801 (-) 420 WP_061972664.1 Rrf2 family transcriptional regulator -
  QNH15_RS16725 (QNH15_16725) - 3170734..3171441 (-) 708 WP_283889397.1 YitT family protein -

Sequence

Protein


Download         Length: 766 a.a.        Molecular weight: 86600.73 Da        Isoelectric Point: 5.2492

>NTDB_id=836404 QNH15_RS16700 WP_283895613.1 3164962..3167262(-) (recD2) [Fictibacillus enclensis strain TL11]
MDKQSSFDLFDEQAKYVKGTLITTIFFNKENLYTVARIRVHETNEAYDEKEAVITGILPPLYQDDRYIFFGHFKEHPKYG
KQYHVTQFRKDIPQTKEGMVQYLSGDLFHGIGKKTAQAIVDHLGENALSSILENPDVLNGIPQLNEEKAKNLYDALVEHQ
GLEQVMITLNPFGIGPQLSMKIYQTYQEEALHIIQNNPYQLIYDIEGIGFQRADELGRGIGLSYNHPERIRAGCLYVLQE
RGTDAGHVYLPADFVLDEVKKLLTNGEAPISDSDIFREIEALREDKKMMMEEDRLYLPSLYFSEKGLAESVTGIAGQEEY
KEAFPQAEFLKALGELEERLGIQYAPSQKQAIETAIFSPLMVLTGGPGTGKTTVIKGIVEVYAELHGVSLDPASYKKDEP
FPVLLVAPTGRAAKRMSESTGIPAFTIHRLLGWKGGAGFEHTDENPLEGKLLIVDEMSMVDIWLAHALFKAVPGNIQVVI
VGDEDQLPSVGPGQVLRDFISSKVIPTVELKDIYRQAEGSSIIELAHHMKNGVLPNDLAKRKSDRSFFSCQTHQVMEVVK
QVCQNARQKGYTARDIQVLAPMYRGNAGIDILNQKLQELFNPPSPQRRELNIQQVVYRVGDKVLQLVNQPEDLVYNGDMG
EIVSIIYAKETTDKEDQLVVAFDEVEVVYTRSDFHHITHAYCCSIHKSQGSEFPIVIMPVVKSYFRMLRRNLIYTGITRS
REFLILCGEESAFELAVQRNDEASRFSRLRDRLTQYQMENLSSMNP

Nucleotide


Download         Length: 2301 bp        

>NTDB_id=836404 QNH15_RS16700 WP_283895613.1 3164962..3167262(-) (recD2) [Fictibacillus enclensis strain TL11]
ATGGATAAACAGTCTTCTTTCGATTTATTCGATGAACAAGCAAAATATGTAAAGGGCACGTTGATTACAACTATTTTTTT
TAATAAGGAAAACCTGTACACCGTAGCCCGCATACGTGTTCATGAGACTAATGAGGCGTATGACGAAAAAGAAGCCGTCA
TTACCGGGATCCTCCCGCCGCTTTACCAGGATGACCGTTATATTTTCTTTGGGCATTTTAAAGAACATCCAAAGTACGGC
AAGCAATACCATGTAACGCAATTTCGCAAAGACATACCACAGACGAAGGAAGGTATGGTTCAATATTTATCGGGTGATTT
GTTTCATGGCATTGGCAAAAAGACGGCACAGGCCATTGTGGACCATCTGGGAGAAAATGCGCTATCTTCCATTCTGGAAA
ATCCCGATGTTCTCAATGGAATTCCGCAGTTGAATGAGGAAAAGGCGAAAAACCTGTACGATGCTCTCGTTGAACATCAG
GGTCTCGAACAAGTTATGATCACTCTGAATCCCTTTGGTATAGGACCTCAGCTGTCCATGAAAATTTACCAAACCTATCA
GGAAGAAGCCCTTCATATTATCCAAAACAACCCGTATCAGCTCATCTACGATATTGAAGGCATCGGTTTTCAGCGGGCAG
ACGAACTCGGAAGAGGGATCGGACTGTCCTATAACCACCCTGAAAGAATCAGAGCGGGCTGTCTTTATGTTCTTCAGGAA
AGGGGAACCGATGCAGGGCATGTTTATCTGCCTGCAGACTTTGTGCTGGATGAAGTGAAAAAATTGCTGACAAATGGGGA
AGCGCCTATTAGTGACAGCGATATTTTCCGTGAAATCGAAGCGCTTCGGGAAGACAAAAAAATGATGATGGAAGAAGACC
GGCTGTATTTGCCGTCTCTTTACTTTTCCGAAAAAGGGCTGGCTGAATCGGTAACAGGAATTGCCGGACAGGAAGAATAT
AAAGAAGCGTTTCCGCAGGCGGAATTTTTAAAGGCGTTGGGTGAGCTTGAAGAGCGGCTCGGTATTCAATATGCCCCTTC
GCAAAAACAAGCGATTGAAACGGCCATTTTTTCGCCGCTTATGGTTCTTACAGGAGGACCTGGAACCGGGAAAACAACGG
TCATTAAAGGGATCGTGGAAGTCTATGCGGAGCTTCATGGCGTTTCGCTTGATCCAGCCTCATATAAAAAAGATGAGCCG
TTTCCGGTGCTTCTTGTTGCCCCGACCGGGCGTGCCGCCAAACGGATGTCGGAATCAACAGGCATCCCAGCATTCACCAT
CCACAGGCTGCTCGGCTGGAAGGGCGGAGCGGGCTTTGAACATACCGATGAAAATCCGCTTGAAGGCAAACTCCTGATAG
TGGATGAAATGTCCATGGTGGATATTTGGCTTGCGCATGCCCTTTTTAAAGCAGTGCCCGGAAATATTCAAGTGGTGATT
GTGGGAGATGAAGATCAGCTGCCTTCTGTCGGTCCCGGCCAGGTATTACGCGATTTCATTTCTTCGAAAGTCATACCGAC
GGTTGAATTGAAGGATATATACAGGCAGGCCGAAGGGTCTTCCATCATTGAACTCGCTCATCATATGAAAAACGGTGTTC
TTCCAAACGACCTTGCAAAGAGAAAGTCGGACAGAAGCTTCTTTTCATGCCAGACCCATCAGGTGATGGAAGTGGTTAAG
CAGGTGTGTCAAAACGCGCGTCAAAAGGGATATACGGCCCGGGATATTCAGGTACTCGCCCCCATGTATCGCGGGAACGC
GGGCATCGATATCCTGAATCAAAAACTACAGGAATTATTTAATCCGCCTTCACCGCAAAGGCGCGAACTAAACATCCAGC
AGGTAGTTTATCGGGTCGGAGATAAAGTGCTTCAGCTCGTTAACCAGCCGGAAGACCTTGTGTACAACGGGGATATGGGT
GAAATAGTATCGATCATTTATGCTAAAGAAACAACGGACAAAGAAGACCAGCTCGTTGTGGCGTTTGATGAAGTGGAAGT
GGTTTATACACGCTCTGATTTTCATCACATTACTCACGCCTACTGCTGTTCCATCCATAAATCCCAGGGGAGTGAATTTC
CCATTGTCATCATGCCTGTTGTAAAAAGTTATTTCCGTATGCTGAGACGGAATTTAATTTATACCGGCATTACAAGGAGT
CGGGAGTTTTTAATCCTGTGCGGGGAAGAATCTGCTTTTGAACTGGCAGTCCAAAGAAATGATGAAGCGTCCAGATTTTC
CCGTCTGAGGGACCGGCTGACTCAATATCAGATGGAAAACCTTTCAAGCATGAATCCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-662)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.92

97.389

0.584