Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   SJJ41_RS35840 Genome accession   NZ_CP141102
Coordinates   301229..301723 (+) Length   164 a.a.
NCBI ID   WP_416316196.1    Uniprot ID   -
Organism   Streptomyces sp. S584     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 296229..306723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJJ41_RS01465 - 297632..297841 (+) 210 WP_147982609.1 dodecin -
  SJJ41_RS01470 - 297910..298398 (-) 489 WP_322982401.1 hypothetical protein -
  SJJ41_RS01475 - 298485..298811 (-) 327 WP_322982402.1 plasmid stabilization protein -
  SJJ41_RS01480 - 299017..299208 (+) 192 WP_104782993.1 DUF6381 family protein -
  SJJ41_RS01485 - 299304..301232 (+) 1929 WP_416316195.1 ABC transporter -
  SJJ41_RS35840 uvrA 301229..301723 (+) 495 WP_416316196.1 hypothetical protein Machinery gene
  SJJ41_RS01490 - 301842..302671 (-) 830 Protein_300 IS5 family transposase -
  SJJ41_RS01495 - 302716..303822 (-) 1107 WP_319353954.1 SPFH domain-containing protein -
  SJJ41_RS01500 - 303852..304289 (-) 438 WP_322982403.1 NfeD family protein -
  SJJ41_RS01505 - 304419..305165 (-) 747 WP_099175811.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 16948.37 Da        Isoelectric Point: 6.3341

>NTDB_id=836359 SJJ41_RS35840 WP_416316196.1 301229..301723(+) (uvrA) [Streptomyces sp. S584]
MTLRGLTIAEVLDLTVEAAAEFLAGTPAAERSLRALLDVGLGYLRLGQPATELSGGEAQRIKLASELQRARRGHTLYLLD
EPTTGLHPADVGVLMRQLHGLVDAGNTVVVVEHDMAVVAGADHVIDLGPGGGDRGGRIVATGTPREVARAAGSRTAGYLA
KALG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=836359 SJJ41_RS35840 WP_416316196.1 301229..301723(+) (uvrA) [Streptomyces sp. S584]
GTGACGCTGCGCGGGCTCACCATCGCCGAGGTGCTGGACCTGACGGTGGAGGCGGCGGCGGAGTTCCTCGCCGGGACCCC
GGCCGCCGAGCGCAGTCTGCGGGCCCTGCTGGACGTGGGGCTCGGCTATCTGCGCCTCGGCCAGCCGGCCACGGAGCTGT
CCGGCGGTGAGGCGCAGCGGATCAAGCTCGCCTCCGAACTCCAGCGCGCCCGGCGGGGGCACACGCTCTACCTCCTGGAC
GAGCCGACGACGGGACTGCACCCGGCCGATGTGGGGGTGCTGATGCGGCAGTTGCACGGGCTGGTGGACGCGGGGAACAC
CGTGGTGGTCGTGGAGCACGACATGGCGGTGGTGGCCGGTGCGGACCATGTGATCGACCTGGGTCCGGGCGGCGGCGACC
GGGGCGGCAGGATCGTCGCCACCGGTACGCCGCGTGAGGTCGCCCGCGCGGCGGGGAGCCGTACGGCCGGCTATCTGGCG
AAGGCGCTCGGGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

55.769

95.122

0.53
  uvrA Streptococcus pneumoniae TIGR4

55.769

95.122

0.53
  uvrA Streptococcus pneumoniae D39

55.769

95.122

0.53