Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH42_RS19815 Genome accession   NZ_CP126108
Coordinates   3884276..3886702 (-) Length   808 a.a.
NCBI ID   WP_226618296.1    Uniprot ID   -
Organism   Cytobacillus firmus strain SQ11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3879276..3891702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH42_RS19790 (QNH42_19790) - 3881858..3882946 (-) 1089 WP_226618298.1 AI-2E family transporter -
  QNH42_RS19795 (QNH42_19795) - 3883069..3883203 (-) 135 WP_081757307.1 YrzQ family protein -
  QNH42_RS19800 (QNH42_19800) - 3883229..3883420 (-) 192 WP_035331236.1 hypothetical protein -
  QNH42_RS19805 (QNH42_19805) - 3883436..3883906 (-) 471 WP_163143571.1 PRC-barrel domain-containing protein -
  QNH42_RS19810 (QNH42_19810) - 3884028..3884177 (-) 150 WP_226618297.1 hypothetical protein -
  QNH42_RS19815 (QNH42_19815) recD2 3884276..3886702 (-) 2427 WP_226618296.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH42_RS19820 (QNH42_19820) - 3886729..3887394 (-) 666 WP_222497696.1 tetratricopeptide repeat protein -
  QNH42_RS19825 (QNH42_19825) mnmA 3887511..3888626 (-) 1116 WP_197248238.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH42_RS19830 (QNH42_19830) - 3888686..3889828 (-) 1143 WP_226618295.1 cysteine desulfurase family protein -
  QNH42_RS19835 (QNH42_19835) - 3889896..3890315 (-) 420 WP_009333072.1 Rrf2 family transcriptional regulator -
  QNH42_RS19840 (QNH42_19840) - 3890315..3891001 (-) 687 WP_226618294.1 YitT family protein -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 91307.37 Da        Isoelectric Point: 4.9434

>NTDB_id=836358 QNH42_RS19815 WP_226618296.1 3884276..3886702(-) (recD2) [Cytobacillus firmus strain SQ11]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEHETYIFYGEFKDHPKFG
IQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEDAITRILNQPSLLDNVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVVQNNPYKLVEDIEGVGFGRADELGYQIGISGNHPDRIKAACLYILET
ESIQAGHVYIEAKPLLQSVKKLLEENKRDLIEYKDISNELIKLEEEGKIMAEGQKIFLPSLYFSEKGLVTNIKRILKQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLELKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFDRHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPANITAQQSDRSFIKCQPGQIADVV
EKVVLNAKKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGSRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEATYTRQDLNQITHAYCCSVHKSQGSEFPIVIMPVVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKMGVERADEQARLTTLSEKLRDAILFNDETGLEDTTEASLTETLSLEEKLLQSDPMIGMGNITPY
DFLEKEYS

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=836358 QNH42_RS19815 WP_226618296.1 3884276..3886702(-) (recD2) [Cytobacillus firmus strain SQ11]
ATGGAAAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGGAAGTTCATAAAGGGCAGACATCTGGTCACAATCTTTCA
TAATGAGCAAAACTTATATACGGTTGTGCGCATTAGGGTTGATGAAACGAATGACTCTTATGATGAGAAAGAAGCGGTCA
TTACCGGCTATCTTCCAAAGATGCATGAGCATGAAACCTATATTTTTTATGGTGAATTCAAAGACCACCCTAAGTTCGGC
ATCCAATTCCATGCAAGCCATTACAGGAAAGATCTTCCCCAGACGAAACAAGGCGTAGCCAATTATTTATCAAGTGAATT
ATTTAAAGGGATTGGCAAGAAAACAGCCGAGCAAATCGTGGAGACACTTGGAGAAGATGCGATTACTCGTATTCTAAACC
AGCCGTCCCTCCTCGATAATGTTCCTAAGCTGTCACCTGAAAAAGCTAAATTGCTTTACGATACGCTGATGGAACACCAG
GGCCTTGAGCAAGCCATGATCGCTCTTAATCAATATGGGTTTGGACCGCAGCTTTCCATGAGAATTTATCAGGTGTATAA
AGAAATGACGATTGAAGTCGTTCAAAATAACCCTTATAAGCTGGTTGAGGATATAGAGGGGGTCGGCTTTGGCCGTGCTG
ACGAGCTGGGATATCAAATTGGCATATCAGGCAATCATCCTGACCGTATTAAAGCTGCCTGCCTCTACATACTTGAAACG
GAGAGTATTCAGGCAGGCCATGTTTATATTGAAGCAAAGCCTCTTCTGCAAAGTGTGAAGAAGCTGCTGGAAGAAAATAA
ACGTGATTTGATTGAATACAAGGATATATCCAATGAACTGATTAAGCTTGAAGAGGAAGGGAAGATCATGGCTGAAGGCC
AGAAAATTTTCCTTCCATCTCTTTATTTTTCCGAAAAAGGACTAGTAACCAATATTAAGCGGATCCTCAAGCAAACCCAG
TATGATGAACAGTTTCCGGAGTCGGAATTTCTTTTGGCCCTTGGAAATTTGGAGGAGCGCCTGGGTGTCCAATATGCCCC
AACTCAAAAGGAAGCCATTCAAACAGCTCTTATGTCTCCTATGCTGATATTGACCGGCGGGCCGGGGACAGGAAAAACAA
CCGTTATTAAGGGGATTGTTGAGTTATATGCCGAGCTGCATGGCTGCTCCCTGGAACTGAAAGATTATAAAAAGGAAGAG
CCCTTTCCCTTCCTGCTGGCAGCCCCTACAGGAAGGGCTGCAAAACGGATGGCAGAATCAACAGGGCTGCCAGCTGTAAC
GATTCACCGTCTTCTTGGATGGAATGGGTCTGAAGGATTTGACCGGCACGAGGAGAGTCCGCTGGAAGGCAGGATTTTAA
TTGTAGATGAAACATCAATGGTTGATGTTTGGCTTGCAAATCAGCTTTTCAAGGCTCTTCCTGAAAATATGCAAGTGATA
CTGGTTGGTGATGAAGACCAGCTGCCTTCAGTGGGTCCCGGCCAGGTTTTGAAGGATCTTCTGCGCTCAGAACGCATTCC
AACTGTCCGTTTAACAGATATATACAGGCAGGCTGAAGGGTCTTCAATTATTGAACTGGCACATGAAATGAAAAAAGGCA
AGCTTCCTGCGAACATCACTGCGCAGCAATCGGACCGTTCATTTATCAAATGCCAGCCGGGCCAAATTGCTGATGTTGTT
GAAAAGGTTGTCCTTAATGCCAAAAAGAAAGGTTATTCATCTAAAGATATTCAGGTGCTTGCCCCAATGTACCGCGGACC
TGCAGGCATCGACAGACTAAACGAAATACTGCAGGAAATACTGAATCCAAATCCCGATGGATCGAGGAAAGAGCTGTCCT
TTGGTGATGTGAAATACAGAATTGGCGATAAGGTCCTTCAGCTTGTCAACCAGCCTGAGAACAATGTTTTTAACGGGGAT
ATGGGTGAAATTGTTTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTTGATGGTGC
GGAAGCTACATACACAAGGCAGGATTTGAACCAGATCACTCATGCCTACTGCTGCTCTGTCCATAAATCGCAGGGAAGTG
AATTTCCGATTGTCATTATGCCTGTTGTTAAAAGCTATTACAGGATGCTGAGAAGAAATCTCCTTTATACCGCCATTACC
CGCAGCAGACAATTTTTGATATTGTGCGGCGAAGAAGATGCATTAAAAATGGGTGTGGAACGTGCGGATGAACAGGCCCG
CTTGACCACTCTTTCTGAAAAGCTGAGAGATGCAATCCTGTTTAATGATGAAACAGGGCTTGAAGATACAACTGAGGCTT
CTCTTACGGAAACACTTTCTCTCGAAGAAAAGCTTCTCCAATCCGATCCAATGATAGGAATGGGAAATATAACACCGTAT
GATTTTTTGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-552)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.857

98.639

0.61