Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   SJJ41_RS25155 Genome accession   NZ_CP141102
Coordinates   5489337..5491070 (-) Length   577 a.a.
NCBI ID   WP_322985316.1    Uniprot ID   -
Organism   Streptomyces sp. S584     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 5484337..5496070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJJ41_RS25145 - 5486321..5487397 (+) 1077 WP_099172462.1 RNA polymerase sigma factor -
  SJJ41_RS25150 - 5487415..5489337 (-) 1923 WP_322985315.1 ABC transporter ATP-binding protein -
  SJJ41_RS25155 rcrP 5489337..5491070 (-) 1734 WP_322985316.1 ABC transporter ATP-binding protein Regulator
  SJJ41_RS25160 - 5491182..5492627 (-) 1446 WP_124276591.1 FGGY family carbohydrate kinase -
  SJJ41_RS25165 - 5492926..5493237 (-) 312 WP_147985161.1 YtxH domain-containing protein -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62832.15 Da        Isoelectric Point: 5.7525

>NTDB_id=836340 SJJ41_RS25155 WP_322985316.1 5489337..5491070(-) (rcrP) [Streptomyces sp. S584]
MLIKLLRTCLGPYRRPIMLLVLLQLLQTCASLYLPSLNADIIDNGVVKGDTGYILQFGAMMIAVSIIQIVCNVGAVYYGA
RTASALGRDVRALIFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVIMALGQDVPLSAV
LLAVLPVLGVSVALIVRRMRPLFRTMQVRLDKVNRVLREQITGNRVIRAFIRDDYEEERFREANTELTDVAVSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFIMVPRAEVCAERIQEVLETESSVVP
PTAPVTKLLKHGHLEIRGAEFRFPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGDVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKDFVERLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSRETAGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=836340 SJJ41_RS25155 WP_322985316.1 5489337..5491070(-) (rcrP) [Streptomyces sp. S584]
GTGCTCATAAAACTCCTGCGGACCTGTCTGGGTCCGTACAGACGTCCCATCATGCTGCTGGTACTGCTCCAGCTCCTGCA
GACCTGCGCCAGCCTCTATCTGCCCAGCCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGTGACACGGGTTACA
TCCTGCAATTCGGCGCCATGATGATCGCCGTCAGCATCATCCAGATCGTCTGCAACGTCGGGGCGGTCTACTACGGCGCC
AGGACGGCCTCCGCCCTGGGGCGCGACGTACGCGCACTGATATTCGACCGGGTGCAGTCGTTCTCCGCCCGCGAGGTGGG
GCGGTTCGGGGCACCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTGCAGATGCTCGTCCTGATGGCGTTCA
CCTTGATGGTCTCGGCGCCCATCATGTGTGTCGGCGGCGTCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCGGCGGTG
CTGCTGGCGGTGCTGCCCGTCCTCGGTGTCTCGGTGGCCCTCATCGTGAGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGTGCGGCTGGACAAGGTGAACCGTGTGCTGCGGGAGCAGATCACCGGCAACCGTGTCATCCGGGCGTTCATCCGTGACG
ACTACGAGGAAGAGCGCTTCCGCGAAGCCAACACGGAGCTGACGGATGTCGCGGTGTCGACGGGCCGGCTGATGGCGCTC
ATGTTCCCGACGGTGATGACGGTCGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGGGCGCACCGCATCGACAGCGG
CGGGATGCAGATAGGCGCGCTCACGGCGTTCCTCGCGTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTGCCG
CCCACCGCCCCGGTCACGAAGCTGCTCAAGCACGGTCATCTGGAGATACGGGGCGCGGAGTTCCGCTTCCCGGGCGCCGA
GGAGCCGGTGCTCCGCTCGGTCGACCTGGTGGCACGGCCCGGGGAGACCACGGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACACTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGCGATGTGCTCGTCGACGGTACGGACGTGCGG
ACACTGGATCCGGTCCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGCTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCGAAGGACTTCG
TGGAGCGGCTGGAACACGGCCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGAGGCCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCCCTGGACTACGCGACGGA
CGCCGCGCTGCGCGGTGCGCTGTCTCGTGAGACGGCGGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGGTCGGGCAGCCATCACGAGCTGATGGACGGCAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.652

100

0.411