Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SJJ41_RS24000 Genome accession   NZ_CP141102
Coordinates   5216711..5218942 (+) Length   743 a.a.
NCBI ID   WP_322986855.1    Uniprot ID   -
Organism   Streptomyces sp. S584     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5211711..5223942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJJ41_RS23970 - 5212332..5213633 (+) 1302 WP_322985164.1 hydrogenase expression protein HypA -
  SJJ41_RS23975 - 5213813..5214196 (-) 384 WP_124276406.1 VOC family protein -
  SJJ41_RS23980 - 5214298..5214669 (-) 372 WP_319223313.1 hypothetical protein -
  SJJ41_RS23985 - 5214685..5215296 (-) 612 WP_147985056.1 ATP-binding protein -
  SJJ41_RS23990 - 5215429..5216166 (-) 738 WP_322985165.1 class I SAM-dependent methyltransferase -
  SJJ41_RS23995 - 5216205..5216540 (-) 336 WP_322985166.1 hypothetical protein -
  SJJ41_RS24000 recD/recD2/recDB 5216711..5218942 (+) 2232 WP_322986855.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SJJ41_RS24005 - 5219140..5220438 (+) 1299 WP_073746777.1 citrate synthase -
  SJJ41_RS24010 - 5220975..5222066 (-) 1092 WP_416316241.1 heavy metal translocating P-type ATPase -
  SJJ41_RS24020 - 5222224..5222529 (-) 306 WP_322985167.1 heavy-metal-associated domain-containing protein -
  SJJ41_RS24025 - 5222678..5222953 (+) 276 Protein_4750 alcohol dehydrogenase -
  SJJ41_RS24030 - 5222986..5223177 (-) 192 WP_124276416.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80098.76 Da        Isoelectric Point: 6.2679

>NTDB_id=836336 SJJ41_RS24000 WP_322986855.1 5216711..5218942(+) (recD/recD2/recDB) [Streptomyces sp. S584]
MPNMAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQPGESLRMEGRWGSHPQFGKQFTVENYTTILPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQHPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQSVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGNCFLPEERL
IADGVKLLQVDTGLVIDCLAELAEDPEGVVREKVPGPEDGQPVTAVYLVPFHRAELSLAAQVRRLLRAPEDRMPAFGDVD
WDKALTWLAGRTGATLAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKNAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLIKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAE
GGPVPAVRLTTIFRQAQKSGVVTNAHRINSGVPPLTQGLDDFFLFVEDETEDAGVLAVDVAARRIPAKFGLNPRRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPGLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTGLDADEQRLTVLT
DEDEEIAYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDYRLRGGVPEDFPEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=836336 SJJ41_RS24000 WP_322986855.1 5216711..5218942(+) (recD/recD2/recDB) [Streptomyces sp. S584]
ATGCCGAACATGGCTGTCCTCGAAGGCGTCCTGGAGCGGATCACGTACGCCAACGAGGAGAACGGGTACACGGTCGCACG
CGTCGACACCGGGCGCGGTGCGGGCGACCTGCTGACCGTCGTCGGGTCGCTGCTCGGGGCGCAGCCCGGTGAGTCCCTGC
GGATGGAGGGGCGTTGGGGCTCCCACCCGCAGTTCGGCAAGCAGTTCACCGTCGAGAACTACACCACGATCCTTCCCGCC
ACGATCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTGATCAAGGGCATCGGGCCCGTCATGGCCGACCGCATCACCAC
CCACTTCGGCGTCGACACCCTGGACATCATCGAGCAGCACCCGAAGCGGCTCGTCGAGGTGCCCGGGCTCGGGCCGAAGC
GGACGAAGATGATCGCCGCGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGAGTGTCGGGGTC
TCCACCTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGTCTCCAGTACGCGCTGTCGCAGTCCACCGACCAGGGCAACTGCTTCCTTCCCGAGGAGCGGCTG
ATCGCCGACGGGGTGAAGCTGCTGCAGGTCGACACCGGGCTGGTCATCGACTGCCTGGCCGAGCTCGCCGAGGACCCGGA
GGGCGTCGTACGGGAGAAGGTGCCGGGCCCCGAGGACGGGCAGCCGGTGACCGCCGTCTACCTGGTCCCCTTCCACCGCG
CCGAGCTCTCCCTCGCCGCCCAGGTCCGGCGCCTGCTGCGGGCGCCGGAGGACCGGATGCCGGCCTTCGGGGACGTCGAC
TGGGACAAGGCGCTGACCTGGCTCGCCGGACGTACGGGGGCGACCCTGGCACCCGAGCAGGAGGCGGCCGTCCGGCTCGC
CCTCACCGAGAAGGTCGCCGTGCTGACGGGCGGCCCCGGCTGCGGGAAGTCGTTCACCGTCCGCTCCGTCGTCGAGCTGG
CCCGCGCCAAGAACGCCAAGGTGGTGCTGGCCGCCCCCACCGGGCGGGCCGCGAAGCGCCTCTCGGAGCTGACCGGCGCC
GAGGCGTCCACCGTGCACCGGCTGCTGGAGCTGAAGCCCGGCGGGGACGCGGCGTACGACCGCGACCGTCCGCTGGACGC
CGACCTGGTCGTCGTGGACGAGGCCTCGATGCTCGACCTGCTGCTCGCCAACAAGCTCATCAAGGCGGTGGCACCCGGTG
CCCACCTCCTGCTGGTCGGCGATGTGGACCAGTTGCCGTCGGTCGGCGCAGGGGAGGTGCTGAGGGACCTGCTCGCCGAG
GGCGGCCCGGTCCCGGCGGTCCGGCTGACCACCATCTTCCGGCAGGCGCAGAAGTCGGGCGTCGTCACGAACGCCCACCG
GATCAACTCCGGGGTGCCGCCGCTGACCCAGGGCCTGGACGACTTCTTCCTGTTCGTGGAGGACGAGACGGAGGACGCCG
GGGTCCTCGCCGTCGATGTCGCGGCCCGCCGCATCCCCGCCAAGTTCGGCCTGAACCCCCGCCGTGACGTGCAGGTCCTC
GCCCCGATGCACCGTGGCCCGGCAGGCGCGGGCCATCTCAACGGACTGCTCCAGCAGGCCATCACCCCGGGCCGCCCCGG
CCTGCCCGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTGACGCAGATTCGGAACAACTATGACAAAG
GGGAGAACGGGGTATTCAACGGTACGGTCGGTGTCGTCACCGGCCTCGACGCGGACGAGCAGCGGCTGACGGTTCTCACG
GACGAGGACGAGGAGATCGCGTACGACTTCGACGAACTGGACGAGCTCGCCCATGCCTACGCGATGACCATCCACCGCTC
GCAGGGCAGCGAATACCCGGCGGTCGTCATCCCGGTGACCACCAGCGCCTGGATGATGCTGCAACGGAACCTGCTGTACA
CGGCGGTGACGCGGGCCAAGAAGCTGGTCGTGCTGGTCGGTTCGCGCAAGGCCATCGGCCAGGCGGTCCGCACGGTTTCC
GCAGGCAGACGCTGCACGGCACTGGATTACCGGCTGCGTGGCGGGGTGCCCGAAGACTTCCCGGAAAAATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

AAA domain (AAA_30)

(335-514)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix domain (HHH_5)

(94-143)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.111

100

0.363