Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH17_RS22510 Genome accession   NZ_CP126107
Coordinates   4542012..4544375 (-) Length   787 a.a.
NCBI ID   WP_283875244.1    Uniprot ID   A0AA95M2X3
Organism   Neobacillus sp. SuZ13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4537012..4549375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH17_RS22495 (QNH17_22495) dtd 4538483..4538926 (-) 444 WP_283875242.1 D-aminoacyl-tRNA deacylase -
  QNH17_RS22500 (QNH17_22500) - 4538938..4541136 (-) 2199 WP_283875243.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH17_RS22505 (QNH17_22505) - 4541509..4542021 (-) 513 WP_026563464.1 adenine phosphoribosyltransferase -
  QNH17_RS22510 (QNH17_22510) recJ 4542012..4544375 (-) 2364 WP_283875244.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH17_RS22515 (QNH17_22515) secDF 4544476..4546740 (-) 2265 WP_283875245.1 protein translocase subunit SecDF -
  QNH17_RS22520 (QNH17_22520) - 4546886..4547182 (-) 297 WP_283875247.1 post-transcriptional regulator -
  QNH17_RS22525 (QNH17_22525) spoVB 4547321..4548868 (+) 1548 WP_283875248.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88190.98 Da        Isoelectric Point: 4.9783

>NTDB_id=836305 QNH17_RS22510 WP_283875244.1 4542012..4544375(-) (recJ) [Neobacillus sp. SuZ13]
MLSSKTRWIVRKSDEQLIKKLETELKITPLVASLLVNRGFDTVESARYFLFGKEEFHDPFLLKGMDIAVNRISQAIEQQE
PILIFGDYDADGVSSTSVLMITLRDLGANVQFYIPNRFTEGYGPNETAFRQAAENGIKLIITVDTGISAVHEAAIAEEIG
LDLIITDHHEPGPVLPTALAIIHPKLPDSTYPFRELAGVGVAFKLAHALYGEVPEHLLEIAVIGTIADLVSLKDENRLIA
KKGLERLKTTKNIGLKALLKQAGVDPLSINEETIGFTLAPRINAVGRLEDADLAVQLILTDDPIEAETLAAEMDDLNKSR
QAIVNAITTEAMDEVESHFPIDTNKVLVIGKEGWNAGVIGIVASRLVEKYYRPVIVLNFDPEKGVAKGSARSIAGFDLFK
NLSTCREILPHFGGHPMAAGMTLKLEDVAELRTRLNTLAEEQLTDEDFIPVTYLDEEIQLEHVSLSSLDEMSLLAPFGMD
NPKPKVLINNVDITSIRKIGSEQNHLKLLVKEKDANLDGVGFGLGHLVDHISPSSKISLIGELSVNEWNNIRKPQIFIHD
IAVESWQLFDYRGQKRINSLSNTVPAENRKFIIFNEEHLGKINPNLMAETILIQDIEAAKSFDGKKANIVLVDFPSSKEI
LKVLFKGKQPARIYAYFYKESSDFFSTVPTRDHFKWFYAFLLKKGPIDLKRNGDELAKHRGWSQETINFMSKVFSDLDFV
TINNGFITLKTGAQKRDLTDSRTYQLKQAQYELERELLFSSFQELKGWFDQVIQESVEFEEAITEWT

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=836305 QNH17_RS22510 WP_283875244.1 4542012..4544375(-) (recJ) [Neobacillus sp. SuZ13]
ATGTTAAGTTCGAAAACTAGATGGATTGTTCGGAAATCCGATGAGCAACTTATTAAAAAGCTTGAAACTGAATTAAAAAT
TACGCCTCTTGTCGCTTCACTGCTTGTTAACCGTGGCTTTGATACCGTTGAATCAGCGCGGTATTTTTTATTTGGAAAGG
AAGAGTTTCACGATCCTTTTCTTTTAAAAGGAATGGATATAGCAGTTAATAGAATTAGTCAAGCCATTGAACAACAAGAG
CCGATTCTTATTTTCGGTGATTATGATGCAGATGGTGTAAGCAGTACATCCGTATTAATGATTACGCTTCGAGACCTTGG
TGCCAATGTTCAATTTTATATTCCTAACCGCTTCACTGAAGGATATGGTCCGAATGAGACTGCATTCCGGCAGGCTGCGG
AAAATGGAATAAAATTGATTATTACTGTGGATACTGGAATATCGGCTGTCCATGAGGCAGCCATTGCCGAAGAGATTGGA
TTGGATCTAATTATTACTGATCACCATGAGCCAGGTCCGGTATTACCAACAGCACTTGCAATTATTCATCCCAAGCTCCC
TGATAGTACCTATCCGTTTCGTGAGTTGGCTGGAGTAGGTGTAGCCTTTAAATTAGCCCATGCCCTCTATGGAGAAGTCC
CAGAGCATTTGCTAGAAATCGCTGTGATAGGAACGATTGCTGATTTAGTCTCTCTAAAAGATGAGAATCGACTGATTGCA
AAAAAAGGACTTGAAAGGTTAAAAACAACTAAAAATATTGGCTTGAAAGCCTTATTAAAACAGGCAGGGGTTGATCCACT
GTCAATAAATGAAGAAACGATTGGTTTTACACTCGCACCAAGGATTAACGCCGTAGGCCGTTTAGAAGATGCGGACCTTG
CCGTCCAGCTTATCTTAACGGATGATCCAATTGAGGCGGAGACCTTGGCAGCGGAAATGGATGACCTTAATAAGTCAAGA
CAGGCAATTGTTAATGCAATTACAACAGAGGCGATGGACGAGGTTGAATCACACTTTCCAATTGATACCAATAAGGTTCT
TGTTATCGGTAAGGAAGGCTGGAATGCTGGTGTCATCGGTATTGTCGCCTCCAGGCTGGTTGAAAAGTATTACCGTCCGG
TGATTGTTTTAAATTTTGACCCAGAAAAGGGAGTAGCTAAGGGTTCTGCCCGTAGTATTGCTGGATTTGATCTCTTTAAG
AATTTATCAACCTGCCGTGAAATTCTGCCTCACTTTGGCGGGCATCCAATGGCAGCAGGAATGACCTTAAAACTAGAAGA
TGTTGCTGAACTTCGCACACGGTTAAATACACTGGCAGAAGAGCAGCTTACCGATGAAGATTTTATTCCGGTGACCTATC
TTGATGAGGAAATTCAACTTGAGCATGTTAGTTTATCATCATTAGATGAGATGAGTCTTTTAGCCCCTTTTGGTATGGAC
AACCCAAAGCCAAAGGTTTTAATAAATAATGTTGATATTACAAGTATCAGAAAAATTGGCAGTGAGCAAAACCATTTAAA
GCTCCTTGTAAAAGAAAAAGATGCAAATCTAGATGGGGTCGGTTTTGGGTTAGGCCACTTGGTGGACCATATCTCACCTT
CATCAAAAATTTCATTAATTGGAGAATTATCTGTCAACGAATGGAACAATATACGTAAACCACAAATTTTTATCCATGAT
ATCGCAGTAGAGTCATGGCAATTATTTGATTATCGGGGACAAAAGCGAATCAACAGTCTTTCAAATACAGTCCCAGCAGA
AAACCGGAAATTTATTATCTTTAATGAAGAGCATCTTGGAAAAATAAACCCTAATTTGATGGCGGAGACCATTCTAATTC
AGGATATAGAGGCAGCAAAGTCTTTCGATGGAAAAAAGGCGAATATTGTTCTGGTTGATTTTCCATCATCGAAAGAGATT
CTTAAGGTTTTATTTAAAGGAAAACAACCTGCTAGGATTTATGCTTATTTTTATAAAGAATCAAGTGATTTCTTCAGCAC
GGTTCCGACACGTGATCATTTTAAATGGTTTTATGCTTTCCTCTTAAAGAAAGGGCCGATTGATCTTAAACGTAATGGTG
ATGAACTTGCTAAACACCGCGGTTGGTCACAGGAAACCATTAACTTTATGTCAAAGGTGTTTTCTGACCTAGATTTTGTT
ACAATAAACAATGGATTTATCACTTTAAAAACTGGAGCGCAAAAGCGTGACTTAACGGACTCTCGAACCTATCAGTTAAA
ACAAGCACAATATGAACTTGAAAGAGAGTTATTGTTTTCGTCCTTTCAAGAATTAAAAGGCTGGTTCGATCAAGTAATTC
AAGAGTCGGTTGAATTTGAGGAGGCAATTACAGAATGGACTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-560)

DHHA1 domain (DHHA1)

(317-437)

DHH family (DHH)

(82-225)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

56.76

99.619

0.565