Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH43_RS19140 Genome accession   NZ_CP126106
Coordinates   4042262..4044637 (-) Length   791 a.a.
NCBI ID   WP_283915281.1    Uniprot ID   -
Organism   Peribacillus simplex strain RZ14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4037262..4049637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH43_RS19125 (QNH43_19125) dtd 4038782..4039225 (-) 444 WP_076365018.1 D-aminoacyl-tRNA deacylase -
  QNH43_RS19130 (QNH43_19130) - 4039241..4041439 (-) 2199 WP_283915280.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH43_RS19135 (QNH43_19135) - 4041759..4042271 (-) 513 WP_061464220.1 adenine phosphoribosyltransferase -
  QNH43_RS19140 (QNH43_19140) recJ 4042262..4044637 (-) 2376 WP_283915281.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH43_RS19145 (QNH43_19145) secDF 4044776..4047037 (-) 2262 WP_283915282.1 protein translocase subunit SecDF -
  QNH43_RS19150 (QNH43_19150) - 4047234..4047539 (-) 306 WP_283915283.1 post-transcriptional regulator -
  QNH43_RS19155 (QNH43_19155) spoVB 4047710..4049272 (+) 1563 WP_283915284.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89078.63 Da        Isoelectric Point: 4.8625

>NTDB_id=836246 QNH43_RS19140 WP_283915281.1 4042262..4044637(-) (recJ) [Peribacillus simplex strain RZ14]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIREAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAADQGVKVLITVDTGISAVDEAKLAGEL
GMDYILTDHHEPGPELPEALAIIHPKLEDSSYPFKELAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSQSLEEATELAHEINDINKE
RQEMVAEMAKEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPAIVLSYDREKGLAKGSARSIAGFDLF
QSLSACREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEQLNEEDFIPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGEKHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVNHWQLFDYRGKGQAEKWLADIPVQNRKIVIFSEDIYPRYPFLENHPDLVHIKNELDAEQLDCFEGHLALMDMPPS
REYLKRVIANKNPSRIYAHFSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=836246 QNH43_RS19140 WP_283915281.1 4042262..4044637(-) (recJ) [Peribacillus simplex strain RZ14]
ATGTTAAAGCCAAAAACCCGGTGGAACTTACGGACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCCTTTTTATTTGTAAAAA
ATCAAACTTTTCATGATCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATACGAGAAGCGATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGATGGCGTGACATCGACCACAGTGATGATGACGGCGCTGACGAGATT
GGGGGCCGATGTTGACTTTTATATCCCGAATCGGTTTACAGAAGGATATGGTCCGAATCCGATGGCATTCCGCCTTGCAG
CCGACCAAGGGGTGAAGGTATTAATAACCGTCGATACCGGAATTTCTGCAGTCGATGAAGCGAAACTTGCCGGCGAGCTC
GGCATGGATTATATTTTGACCGACCACCATGAACCGGGACCGGAACTGCCTGAGGCCTTGGCAATCATCCATCCTAAACT
TGAGGACAGTTCCTATCCATTTAAAGAGCTAGCCGGAGTAGGGGTCGCATTTAAGCTGGCACACGCCTTGCTTGGGGAAT
TGCCTGAGGATTTGCTTGAGATAGCGGCAATCGGCACGATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGTTTGACGCGCCGCCCGGGACTTGTTGCCTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCGATGGCACCGCGGATCAATGCTGTCGGGCGCCTTGGAGATGCCGATC
CCGCTGTCGATTTATTGATGTCACAAAGTCTGGAAGAAGCGACGGAACTCGCCCATGAAATCAATGATATCAATAAAGAG
CGACAGGAAATGGTTGCTGAAATGGCCAAAGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCTGAGTCCAATGGTGT
GCTCATCATCGGCAGGGAAGGCTGGAACGCCGGAGTTGTGGGGATTGTGGCCTCTAAACTAGTTGAACGCTTTTACCGGC
CCGCGATTGTATTGAGCTATGACCGGGAAAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGCCGGTTTCGATCTATTT
CAAAGTCTTTCCGCCTGCCGTGAAATGCTGCCTCATTTCGGTGGACATCCGATGGCCGCTGGAATGACATTGAAAATTGA
AGATGTTCAGGAACTCAGGGACCGCATGAACTTGATTGCGAAGGAACAACTGAACGAAGAGGACTTCATACCCATTACAA
ACTTGGACGGGGCAACGACGTTAGCTGAAGTTTCCATTCAAACGATTCAGGAAATGAGCTTGCTGGCGCCATTTGGGGTT
ACGAATCCGAAGCCGAAGATTTTGATAGATTCCGTCCAGCTTTCAAGTGTCCGCAAAATTGGTGCCAACCAAAATCACTT
GAAGGTCCAGCTGGAAGATGGTGAAAAACACAAACTTGACGGAGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCACGCTGAAGTCTCGGTCATTGGTGAGCTTTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTAAACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGTACAAAACCGGAAGATCGTCATTTTCTCGGAAGATATTTATCCCAGATACCCATTTTTGGAAAACCATCCAGATCTTG
TCCATATCAAGAATGAACTGGATGCAGAGCAGCTCGACTGCTTTGAAGGTCATTTGGCATTAATGGACATGCCTCCTTCC
AGGGAATATTTGAAACGGGTGATTGCCAATAAGAACCCTTCGCGTATCTACGCTCACTTTTCCCATGAACAGGACCATTT
CTTGAGTACGATGCCAACAAGGGATCATTTTAAATGGTTCTATGCCTTCCTTGCCAAAAAGGGTCCGCTCGACGTGAAGA
GATACGGTGATGACCTGGCCAAATATCGCGGCTGGTCGAGAGATACCGTGGATTTCATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAGAATGGGTTAATTATGCTAACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-562)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

DHHA1 domain (DHHA1)

(316-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.855

100

0.55