Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH43_RS18800 Genome accession   NZ_CP126106
Coordinates   3963502..3965907 (-) Length   801 a.a.
NCBI ID   WP_283915233.1    Uniprot ID   -
Organism   Peribacillus simplex strain RZ14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3958502..3970907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH43_RS18775 (QNH43_18775) - 3959745..3960821 (-) 1077 WP_283915230.1 AI-2E family transporter -
  QNH43_RS18780 (QNH43_18780) - 3961050..3961265 (-) 216 WP_063233024.1 hypothetical protein -
  QNH43_RS18785 (QNH43_18785) - 3961255..3961797 (-) 543 WP_283915231.1 PRC-barrel domain-containing protein -
  QNH43_RS18790 (QNH43_18790) - 3962075..3962845 (-) 771 WP_283915232.1 TPM domain-containing protein -
  QNH43_RS18795 (QNH43_18795) - 3962845..3963411 (-) 567 WP_048681258.1 LemA family protein -
  QNH43_RS18800 (QNH43_18800) recD2 3963502..3965907 (-) 2406 WP_283915233.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH43_RS18805 (QNH43_18805) - 3965944..3966609 (-) 666 WP_283915234.1 tetratricopeptide repeat protein -
  QNH43_RS18810 (QNH43_18810) mnmA 3966731..3967846 (-) 1116 WP_283915235.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH43_RS18815 (QNH43_18815) - 3967876..3969021 (-) 1146 WP_283915236.1 cysteine desulfurase family protein -
  QNH43_RS18820 (QNH43_18820) - 3969082..3969501 (-) 420 WP_034308657.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90511.35 Da        Isoelectric Point: 4.8767

>NTDB_id=836244 QNH43_RS18800 WP_283915233.1 3963502..3965907(-) (recD2) [Peribacillus simplex strain RZ14]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQYHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLFTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLGVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPADVTKQQEDRSFIRCQTGQIPQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNGNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEEMRVEKGEEQQQTSYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=836244 QNH43_RS18800 WP_283915233.1 3963502..3965907(-) (recD2) [Peribacillus simplex strain RZ14]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAATGTTCATGAAAGGTAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAACATGTACTCGGTTGTAAGAATTCGCGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATACCATGTAGAGCATTTTCGCAAGGATCTGCCTCAATCCAAGGAAGGAATCGTCAGTTATTTATCCGGTGACCT
TTTCAAGGGGATTGGGAAAAAAACAGCTGAAAGCATTGTTGAGACACTGGGTGAAAAGGCCATTTCAAAAATTCTGGCTC
AGCCCTCGCTACTTGATGACATCCCGAAGCTATCCGGGGAAAAGGCAAAGGGTCTCTATGATACATTGGTCGAGCATCAA
GGTCTGGAGCAGGTGATGATTGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAAATCTATCAAATGTATAA
GCAGGATACGATCACGATGGTTCAGGGAAATCCGTATAAGCTCGTTGAGGATATTGAAGGGATTGGTTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTGGGCATTTCCGGCAGCCATCCCGACCGAATCAAGGCTGCATGCTTGTTTACGCTTGAATCA
CAATGCCTCCAGGACGGAAATATCTACATAGAGGCCGAGCAGCTATTGGAGGCCGTCAAACGTCTGCTGGAGGAAAATAA
ACGGGATCGCATTGAGTTCACGAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTTTTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGAGGCTGCTTGCCCAAACCGAG
TATGAGGACCAGTTCCCGGAATCGGAGTTCCTGCTGGCACTTGGGGAGCTGGAGGAGCGGCTGGGTGTTTCCTATGCACC
GGCCCAAAAGGAAGCGATCCAGACAGCCCTGCAATCACCCATGTTAATCTTGACGGGCGGACCGGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGACATTAACGATTATAAAAAAGAAGGA
AGCGATCCATTTCCATTCGTACTTGCGGCCCCTACTGGCCGTGCAGCGAAACGAATGGCCGAATCGACTGGGCTCCCCGC
CGTCACGATCCATCGTTTGCTGGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGCA
TCGTGATCATCGATGAGGTTTCCATGGTGGATACGTGGCTGGCCCATCAATTGTTTAAAGCGCTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTGGAACATATTTATCGTCAAGCTGATGGCTCATCGATTATTGAATTGGCCCATGAAATCAAAA
AAGGCAGGCTTCCGGCTGATGTCACGAAACAGCAGGAAGATCGATCGTTCATTCGCTGCCAAACAGGTCAAATCCCCCAA
GTGATCGAGAAAGTGGTTGCCAATGCCAGGACGAAAGGCTTCACGGCCAAGGATATACAGGTGCTGGCTCCGATGTATAG
AGGGCCTGCCGGGATTGATGCCCTGAATAAAATGCTTCAGGAAGTGTTCAATGGCAATGCGAATGAAAAGCGGCGGGAAA
TAAAATTCGGAGATGTGATATACAGAACGGGAGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAGGGTGTCTTTAAT
GGCGATATGGGTGAAATCGTGTCCATATTGTTCGCAAAAGAAAATACAGATCATGTCGATAAAGTAATCATATCGTTCGA
AGGCATCGAAGTGACTTACACGAAACAGGACTTGAACCAGATTACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GGAGCGAATTCCCCATTGTCATTTTACCTGTAGTGAAAAGTTATTATCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACGCGCAGTAAAAATTTCTTGATCCTTTGCGGTGAAGAAGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATTTTGAGTGAAGAAGAAATGCGGGTGGAAAAGGGAGAGGAAC
AGCAACAAACGAGCTATCTTGATATTCTCATGCATGCTGACCCGATGATCGGAATGGAGAATGTCACGCCATATGATTTC
ATGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-555)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.172

100

0.622