Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QNH19_RS08235 Genome accession   NZ_CP126104
Coordinates   1629793..1630572 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain MB7_B11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1624793..1635572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH19_RS08215 (QNH19_08215) trmFO 1625480..1626787 (+) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QNH19_RS08220 (QNH19_08220) xerC 1626857..1627774 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  QNH19_RS08225 (QNH19_08225) hslV 1627790..1628335 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  QNH19_RS08230 (QNH19_08230) hslU 1628343..1629755 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  QNH19_RS08235 (QNH19_08235) codY 1629793..1630572 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QNH19_RS08240 (QNH19_08240) flgB 1630926..1631315 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  QNH19_RS08245 (QNH19_08245) flgC 1631315..1631767 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  QNH19_RS08250 (QNH19_08250) fliE 1631778..1632098 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  QNH19_RS08255 (QNH19_08255) fliF 1632141..1633751 (+) 1611 WP_283888378.1 flagellar basal-body MS-ring/collar protein FliF -
  QNH19_RS08260 (QNH19_08260) fliG 1633764..1634780 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  QNH19_RS08265 (QNH19_08265) fliH 1634773..1635528 (+) 756 WP_283888380.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=836093 QNH19_RS08235 WP_003154263.1 1629793..1630572(+) (codY) [Bacillus velezensis strain MB7_B11]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=836093 QNH19_RS08235 WP_003154263.1 1629793..1630572(+) (codY) [Bacillus velezensis strain MB7_B11]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ACCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471