Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH44_RS19530 Genome accession   NZ_CP126102
Coordinates   3825278..3827704 (-) Length   808 a.a.
NCBI ID   WP_283913495.1    Uniprot ID   -
Organism   Cytobacillus firmus strain LN5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3820278..3832704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH44_RS19505 (QNH44_19505) - 3822860..3823948 (-) 1089 WP_163143568.1 AI-2E family transporter -
  QNH44_RS19510 (QNH44_19510) - 3824071..3824205 (-) 135 WP_081757307.1 YrzQ family protein -
  QNH44_RS19515 (QNH44_19515) - 3824231..3824422 (-) 192 WP_035331236.1 hypothetical protein -
  QNH44_RS19520 (QNH44_19520) - 3824438..3824908 (-) 471 WP_163143571.1 PRC-barrel domain-containing protein -
  QNH44_RS19525 (QNH44_19525) - 3825030..3825179 (-) 150 WP_197087702.1 hypothetical protein -
  QNH44_RS19530 (QNH44_19530) recD2 3825278..3827704 (-) 2427 WP_283913495.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH44_RS19535 (QNH44_19535) - 3827731..3828396 (-) 666 WP_197248236.1 tetratricopeptide repeat protein -
  QNH44_RS19540 (QNH44_19540) mnmA 3828513..3829628 (-) 1116 WP_283913496.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH44_RS19545 (QNH44_19545) - 3829688..3830830 (-) 1143 WP_283913497.1 cysteine desulfurase family protein -
  QNH44_RS19550 (QNH44_19550) - 3830898..3831317 (-) 420 WP_009333072.1 Rrf2 family transcriptional regulator -
  QNH44_RS19555 (QNH44_19555) - 3831317..3832003 (-) 687 WP_263599443.1 YitT family protein -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 91267.37 Da        Isoelectric Point: 4.9768

>NTDB_id=836005 QNH44_RS19530 WP_283913495.1 3825278..3827704(-) (recD2) [Cytobacillus firmus strain LN5]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEHETYIFYGEFKDHPKFG
IQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEGAITRILNQPSLLDNVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVVQNNPYKLVEDIEGVGFGRADELGYQIGISGNHPDRIKAACLYILET
ESMQAGHVYIEAKPLLQSVKKLLEENKRDLIEYKDISNELIKLEEEGKIMAEGQKIFLPSLYFSEKGLVTNIKRILKQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLELKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFDRHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPANITAQQSDRSFIKCQPGQIADVV
EKVVLNAKKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGSRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEATYTRQDLNQITHAYCCSVHKSQGSEFPIVIMPVVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKMGVERADEQARLTTLSEKLRDAILFNDETGLEDTTEASLTETLSLEEKLLQSDPMIGMGNITPY
DFLEKEYS

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=836005 QNH44_RS19530 WP_283913495.1 3825278..3827704(-) (recD2) [Cytobacillus firmus strain LN5]
ATGGAAAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGGAAGTTCATAAAGGGCAGACATCTGGTCACAATCTTTCA
TAATGAGCAAAACTTATATACGGTTGTGCGCATTAGGGTTGATGAAACGAATGACTCTTATGATGAGAAAGAAGCGGTCA
TTACCGGCTATCTTCCAAAGATGCATGAGCATGAAACCTATATTTTTTATGGTGAATTCAAAGACCACCCTAAGTTCGGC
ATCCAATTCCATGCAAGCCATTACAGGAAAGATCTTCCCCAGACGAAACAAGGCGTAGCCAATTATTTATCAAGTGAATT
ATTTAAAGGGATTGGCAAGAAAACAGCCGAGCAAATCGTGGAGACACTTGGAGAAGGTGCGATTACTCGTATTCTAAACC
AGCCGTCCCTCCTCGATAATGTTCCCAAGCTGTCACCTGAAAAAGCTAAATTGCTTTACGATACGCTGATGGAACACCAG
GGCCTTGAGCAAGCCATGATCGCTCTTAATCAATATGGGTTTGGACCGCAGCTTTCCATGAGAATTTATCAGGTGTATAA
AGAAATGACGATTGAAGTCGTTCAAAATAACCCTTATAAGCTGGTTGAGGATATAGAGGGGGTCGGCTTTGGCCGTGCTG
ACGAGCTGGGATATCAAATTGGCATATCAGGCAATCATCCTGACCGTATTAAAGCTGCCTGCCTCTACATACTTGAAACG
GAGAGTATGCAGGCAGGCCATGTTTATATTGAAGCAAAGCCTCTTCTGCAAAGTGTGAAGAAGCTGCTGGAAGAAAATAA
ACGTGATTTGATTGAATACAAGGATATATCCAATGAACTGATTAAGCTTGAAGAGGAAGGGAAGATCATGGCTGAAGGCC
AGAAAATTTTCCTTCCATCTCTTTATTTTTCCGAAAAAGGACTAGTAACCAATATTAAGCGGATCCTCAAGCAAACCCAG
TATGACGAACAGTTTCCGGAGTCGGAATTTCTTTTGGCCCTTGGAAATTTGGAGGAGCGCCTGGGTGTCCAATATGCCCC
AACTCAAAAGGAAGCCATTCAAACAGCTCTTATGTCTCCTATGCTGATATTGACCGGCGGGCCGGGGACAGGAAAAACAA
CCGTTATTAAGGGGATTGTTGAGTTATATGCCGAGCTGCATGGCTGCTCCCTGGAACTGAAAGATTATAAAAAGGAAGAG
CCCTTTCCCTTCCTGCTGGCAGCCCCTACAGGAAGGGCTGCAAAACGGATGGCGGAATCAACAGGGCTGCCAGCTGTAAC
GATTCACCGTCTTCTTGGATGGAATGGGTCTGAAGGATTTGACCGGCACGAGGAGAGTCCGCTGGAAGGCAGGATATTAA
TTGTAGATGAAACATCAATGGTTGATGTTTGGCTTGCAAATCAGCTTTTCAAGGCTCTTCCTGAAAATATGCAAGTGATA
CTGGTTGGTGATGAAGACCAGCTGCCTTCAGTGGGTCCCGGCCAGGTTTTGAAGGATCTTCTGCGCTCAGAACGCATTCC
AACTGTCCGTTTAACAGATATATACAGGCAGGCTGAAGGGTCTTCAATTATTGAACTGGCACATGAAATGAAAAAAGGCA
AGCTTCCTGCGAACATCACTGCGCAGCAATCGGACCGTTCATTTATCAAATGCCAGCCGGGCCAAATTGCTGATGTTGTT
GAAAAGGTTGTCCTTAATGCCAAAAAGAAAGGTTATTCATCTAAAGATATTCAGGTGCTTGCCCCAATGTACCGCGGACC
TGCAGGCATCGACAGACTAAACGAAATACTGCAGGAAATACTGAATCCAAATCCCGATGGATCGAGGAAAGAGCTGTCCT
TTGGTGATGTGAAATACAGAATTGGCGATAAAGTCCTTCAGCTTGTCAACCAGCCTGAGAACAATGTTTTTAACGGGGAT
ATGGGTGAGATTGTTTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTTGATGGTGC
GGAAGCTACATACACAAGGCAGGATTTGAACCAGATCACTCATGCCTACTGCTGCTCTGTCCATAAATCGCAGGGAAGTG
AATTTCCGATTGTCATAATGCCTGTTGTTAAAAGCTATTACAGGATGCTGAGAAGGAATCTCCTTTATACCGCCATTACC
CGCAGCAGACAATTTTTGATATTGTGCGGCGAAGAAGATGCATTAAAAATGGGTGTGGAACGTGCGGATGAACAGGCCCG
CTTGACCACTCTTTCTGAAAAGCTGAGAGATGCAATCCTGTTTAATGATGAAACAGGGCTTGAAGATACAACTGAGGCTT
CTCTTACGGAAACACTTTCTCTCGAAGAAAAGCTTCTCCAATCCGATCCAATGATAGGAATGGGAAATATAACACCGTAT
GATTTTTTGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-552)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.857

98.639

0.61