Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH24_RS17795 Genome accession   NZ_CP126101
Coordinates   3580250..3582673 (-) Length   807 a.a.
NCBI ID   WP_283868859.1    Uniprot ID   A0AAX3WR25
Organism   Lysinibacillus pakistanensis strain LY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3575250..3587673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH24_RS17780 (QNH24_17780) hpaB 3576490..3577920 (-) 1431 WP_283868857.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  QNH24_RS17785 (QNH24_17785) - 3578262..3578450 (+) 189 WP_054771076.1 hypothetical protein -
  QNH24_RS17790 (QNH24_17790) - 3578520..3580217 (-) 1698 WP_283868858.1 polysaccharide deacetylase family protein -
  QNH24_RS17795 (QNH24_17795) recD2 3580250..3582673 (-) 2424 WP_283868859.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH24_RS17800 (QNH24_17800) hisA 3582865..3583632 (+) 768 WP_283872882.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  QNH24_RS17805 (QNH24_17805) - 3583629..3583916 (+) 288 WP_054771073.1 hypothetical protein -
  QNH24_RS17810 (QNH24_17810) - 3584226..3584948 (+) 723 WP_283868860.1 GTP pyrophosphokinase family protein -
  QNH24_RS17815 (QNH24_17815) - 3585087..3586529 (-) 1443 WP_283868861.1 MDR family MFS transporter -
  QNH24_RS17820 (QNH24_17820) - 3586718..3587377 (-) 660 WP_283868862.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 90443.77 Da        Isoelectric Point: 4.8142

>NTDB_id=835955 QNH24_RS17795 WP_283868859.1 3580250..3582673(-) (recD2) [Lysinibacillus pakistanensis strain LY1]
MAENLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGLLRQHPKYGVQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRLILEDPNVLDSVPRLSAEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTDAIELLTENPYRLIEDVEGVGFVRADELGAKLGITGNHPDRIKAAILHILNAAA
LSEGHVFLDAEQVLPLVKDMLEQSQREEIPFEAISKACIELREESKICGEETRLYLPSLYFSEVGIASKIVSLIERNKKA
EHFSRDEIRKAIGETEDLLHVTYAETQANAIEQALNSAAMILTGGPGTGKTTVVRGIVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLSESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEEVQVVFV
GDQDQLPPVGPGQVLKDLLASHQIPTVELTEVYRQAEGSTIIELAHQIKRGTIPNDLSVKTSDRSFIKASSDQVASVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETIEKQDLLVVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPEVLADGLQRTDDLQRFTSLRARLNPMDIAEEITEKEAVSVEIDEEPIKDVKLTVETEPLIHPMIGMDGVS
PYDFLDD

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=835955 QNH24_RS17795 WP_283868859.1 3580250..3582673(-) (recD2) [Lysinibacillus pakistanensis strain LY1]
ATGGCTGAGAATCTTGATTTATTTGAACTAAATAAATTTTTTATACTCGGACGTCCAATCGTCTCTATCTTTCATAATGC
TCAAAATATGTATTCGATTGTTCGAGTGAAAATTCAAGAGACCAATTTACAATATGAAGATAAAGAAATCATTGTTGTCG
GCTATTTTCCGCCATTACAAATGGATGAACAATATCGTTTTACAGGTTTATTGAGACAGCATCCAAAATACGGTGTACAA
TTTCAAATTGAGACGTTTACCAAAGAGGTACCAGCGACAGAGCAAGGAATCATTCATTACCTATCAAGTGATTTATTTGT
TGGTATCGGAAAAAAAACGGCTGAAACAATTGTAGAGAAACTTGGAGCCAATGCTCTACGTCTAATTTTGGAGGACCCAA
ATGTGCTTGATAGTGTCCCTCGTCTATCAGCCGAAAAAAAAGAGGTTATCCACCGTACAATCGAACAAAATCTTGGTCTT
GAGCGAGTAATGATCCAGCTAAATGAATGGGGATTTGGACCTCAGCTCGGTATGAAAATTTACCAAACATATCGCACTGA
TGCCATTGAGCTTCTTACAGAAAATCCATATCGTCTCATTGAAGATGTCGAGGGTGTGGGATTCGTTCGTGCAGATGAGC
TAGGTGCAAAATTAGGGATTACTGGTAATCATCCAGACCGTATTAAGGCCGCTATTTTACATATTCTAAATGCAGCAGCT
TTATCAGAAGGGCATGTGTTTTTAGATGCTGAGCAAGTTTTGCCCTTAGTAAAAGATATGCTTGAGCAAAGCCAACGAGA
GGAAATACCATTTGAGGCAATATCAAAGGCCTGTATTGAATTGCGTGAGGAAAGTAAAATTTGTGGGGAAGAAACAAGGC
TGTATTTACCGTCTCTTTATTTTTCAGAAGTAGGAATCGCCTCTAAAATAGTGTCATTAATTGAACGGAATAAGAAAGCT
GAGCATTTTAGTAGGGACGAAATTCGGAAAGCGATTGGAGAAACAGAGGACTTACTCCATGTGACCTATGCCGAAACACA
GGCCAATGCTATTGAACAAGCCTTAAACTCAGCTGCTATGATTTTAACAGGTGGTCCAGGTACTGGTAAAACAACGGTTG
TACGAGGAATAGTGGAAGTCTATGCAAAGCTTCATGGTTTATCATTAAATCCAAAGGAATATGCGCAAAAAGAAGAACCC
TTTCCCATTATTTTATGCGCTCCTACAGGCCGTGCAGCTAAGCGTTTATCAGAATCAACAGAACTTCCTGCAATGACCAT
TCATCGATTATTAGGATTTACTGGACAGGAAAAGGAAGAGGAAACAGAGCGTGAGGTTACAGGAAAGCTCATCATTGTTG
ATGAAATGTCGATGGTGGATACTTGGCTTGCTCATCAATTATTGAAAGCTTTACATGAGGAAGTTCAGGTTGTATTTGTG
GGTGATCAGGATCAGCTTCCTCCAGTAGGACCTGGACAGGTGTTAAAGGATTTATTGGCCTCGCATCAAATTCCAACTGT
TGAATTAACTGAAGTGTATAGACAGGCTGAGGGCTCAACTATTATTGAACTTGCCCATCAAATTAAACGCGGTACAATCC
CAAATGATTTATCGGTAAAAACGTCTGACCGCTCTTTTATTAAAGCCTCCTCAGATCAAGTAGCAAGTGTTGTTACACAG
GTTGTAAAGAGTGCAGTTGCGAAAGGACAAGAAATACGCAATATTCAGGTGTTAGCACCAATGTACAAGGGACCAGCAGG
TATTGATAACCTGAATAAAATGATCCAAGAGCTTATAAATCCAAACGATACTGGTACTAGAAAAGAGCTTGTCTTTGGTG
ATGTAACCTATCGTATAAAGGATAAAGTATTACAGCTTGTCAATCAGCCAGAAAGCAATGTTTTTAATGGAGATATGGGT
GAAGTCATCAGTATTATCAAAGCGAAGGAAACTATCGAGAAACAGGATTTACTTGTCGTTTCATTTGACGGCATTGAAGT
AACCTATCAGCGCAGTGACCTCAATCAATTGACACTCGCCTATTGTTGTTCCATTCATAAATCACAGGGCTCGGAATTTC
AGACAGTAATTATGCCAGTAGTTCGAGGTTATTCTAAAATGCTGCGTCGTAATCTGCTATATACTGGTATAACCCGTGCG
AAAAACTTTCTGATTTTATGTGGCGAGCCAGAAGTGCTCGCTGATGGCTTACAGCGTACAGATGATCTACAGCGCTTTAC
TTCTTTACGTGCAAGACTTAATCCAATGGATATTGCAGAGGAAATAACAGAAAAAGAAGCCGTATCAGTGGAAATAGATG
AAGAGCCGATAAAAGATGTAAAGTTAACGGTTGAAACAGAACCGCTGATCCATCCAATGATTGGAATGGACGGGGTTTCA
CCGTACGATTTTTTAGATGACTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-660)

AAA domain (AAA_30)

(343-550)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.823

98.761

0.522