Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH45_RS22730 Genome accession   NZ_CP126099
Coordinates   4342645..4344984 (-) Length   779 a.a.
NCBI ID   WP_283882873.1    Uniprot ID   A0AA95LQN9
Organism   Bacillus wiedmannii strain LN15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4337645..4349984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH45_RS22700 (QNH45_22700) - 4338421..4338597 (-) 177 WP_001242605.1 hypothetical protein -
  QNH45_RS22705 (QNH45_22705) - 4338683..4338874 (-) 192 WP_063222857.1 hypothetical protein -
  QNH45_RS22710 (QNH45_22710) - 4338953..4339117 (-) 165 WP_283882869.1 DUF2568 domain-containing protein -
  QNH45_RS22715 (QNH45_22715) - 4339233..4339673 (-) 441 WP_283882870.1 D-tyrosyl-tRNA(Tyr) deacylase -
  QNH45_RS22720 (QNH45_22720) relA 4339691..4341874 (-) 2184 WP_002145623.1 GTP diphosphokinase -
  QNH45_RS22725 (QNH45_22725) - 4342085..4342597 (-) 513 WP_000346221.1 adenine phosphoribosyltransferase -
  QNH45_RS22730 (QNH45_22730) recJ 4342645..4344984 (-) 2340 WP_283882873.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH45_RS22735 (QNH45_22735) - 4345086..4345979 (-) 894 WP_283882875.1 cation diffusion facilitator family transporter -
  QNH45_RS22740 (QNH45_22740) secDF 4346136..4348400 (-) 2265 WP_283882877.1 protein translocase subunit SecDF -
  QNH45_RS22745 (QNH45_22745) - 4348671..4348955 (-) 285 WP_087982111.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88146.81 Da        Isoelectric Point: 5.0012

>NTDB_id=835839 QNH45_RS22730 WP_283882873.1 4342645..4344984(-) (recJ) [Bacillus wiedmannii strain LN15]
MLQPKTRWKEKEYDNERVSELASKLKLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGAGVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSLAPRINAVGRLEDATPAVHLLLSDDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENNFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANIAELPKEKITMVYFSEEVLNKFSLEDYKEHMMHASEVTHLDNQYIVLLDLPKGTDELRD
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKAPFSLRQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=835839 QNH45_RS22730 WP_283882873.1 4342645..4344984(-) (recJ) [Bacillus wiedmannii strain LN15]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATGATAATGAGCGAGTGAGTGAATTAGCAAGTAAATTAAAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGTAGAGGACTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGACGGAGTAAGTAGTACGACTGTGTTATATCTTGCCTTGCAAGAATT
AGGTGCAGGTGTAGAATTTTATATTCCAAACCGTTTTACAGAAGGATATGGACCAAACGAAGAAGCATTTCGTTGGGCGC
ATAGCGCAGGATTCTCACTAATTATTACTGTCGATACTGGTATCGCAGCAGTACATGAAGCGAAGGTAGCGAAGGAGCTT
GGAATAGATCTTATTATTACAGATCACCATGAGCCGCCACCAGAATTGCCAGAAGCACTTGCAATTATTCATCCGAAATT
AGATGGCGGTGTATATCCGTTTCACTATTTAGCTGGTGTAGGTGTTGCGTTTAAAGTTGCACATGCACTACTAGGCCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATTGGTACAGTAGCCGATTTAGTATCACTTCATGGTGAGAATAGATTGCTA
GTGAAGCGCGGTTTAAAGCATATGCGCATGACGAAAAATATCGGACTAAAGGCGCTATTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAGAGTATTGGATTCTCACTCGCACCGCGTATTAATGCAGTTGGACGTTTAGAAGATGCTACGC
CGGCTGTACATCTTTTATTATCAGATGATCCAGAAGAAGCGAAAGAGCTAGCTGAAGAAATTGATGAGCTGAACAAACTG
CGAAAAGATATTGTAAAGCAAATTACAGAAGAAGCTATCGCTGAAGTGGAAAATAATTTCCCGCCAGAAGACAATAAAGT
ACTAGTACTGGCAAAAGAAGGCTGGAATCCAGGTGTAATTGGAATTGTCGCATCTAAATTAGTTGAACGTTTTTATCGTC
CAACGATTGTATTATGCATTGATCCTGTAAAAGAAACAGCAAAAGGTTCAGCACGTAGTATTGCAGGATTTGATTTGTTT
GCAAATTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGGCATCCGATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGATGAATTACGCCGCCGCTTAAATGAACAAGCAGAGGTAATTTTAACAGAAGAAGATTTTATTCCAATTACAG
CTGTTGATGTCTTTTGTAAAGTGGAGGATGTAACACTGGCAGCAATTGAAGACATGCAAAAGTTAGCGCCATTTGGTGTT
GGAAATCCAAAACCGCGTATTGCAGTGAAGGATGCAGAGCTAGAAAGTATTCGTGCAATTGGATCAGATGGCTCTCATTT
AAAAATGGCTCTTCGCGATGGACAAGCGACACTGGATACAATCGGATTTGGTTTTGGTGCGTATGCGAAAGAAATTTCTC
CAGTTGCAAAGGTATCTGTAATAGGGGAAGCATCTATCAATGAATGGAATAATTTTAAGAAGCCGCAATTAATGGTACAA
GATATTGCTGTAGAAGCATGGCAATTATTTGATTGGCGTAGTATGCGTAACGTAGAAGCAAATATAGCCGAACTTCCGAA
AGAAAAAATAACGATGGTGTATTTTTCTGAAGAGGTATTGAATAAATTTTCTCTAGAAGACTATAAAGAGCATATGATGC
ATGCATCAGAAGTAACTCATTTAGACAATCAATACATCGTGTTACTTGATTTGCCAAAAGGAACAGATGAATTACGAGAT
TTATTTAAAGTGGGGTTCCCGTCGCGAATTTATACGCTATTTTATCAAGAGAATAATCATTTATTTAGTACTGTTCCAAC
GAGGGAACATTTTAAATGGTACTATTCGTTCTTGAGCCAAAAAGCACCATTTTCTTTAAGACAATATGGGGAACAACTAT
GTCGACATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.972

99.358

0.526