Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH45_RS22650 Genome accession   NZ_CP126099
Coordinates   4325091..4327427 (-) Length   778 a.a.
NCBI ID   WP_283882851.1    Uniprot ID   A0AA95LR32
Organism   Bacillus wiedmannii strain LN15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4320091..4332427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH45_RS22625 (QNH45_22625) - 4322753..4323097 (+) 345 WP_283882847.1 PH domain-containing protein -
  QNH45_RS22630 (QNH45_22630) - 4323136..4324203 (-) 1068 WP_048562241.1 AI-2E family transporter -
  QNH45_RS22635 (QNH45_22635) - 4324380..4324592 (+) 213 WP_000242555.1 hypothetical protein -
  QNH45_RS22640 (QNH45_22640) - 4324628..4324756 (-) 129 WP_001053553.1 YrzQ family protein -
  QNH45_RS22645 (QNH45_22645) - 4324775..4324963 (-) 189 WP_000469281.1 hypothetical protein -
  QNH45_RS22650 (QNH45_22650) recD2 4325091..4327427 (-) 2337 WP_283882851.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH45_RS22655 (QNH45_22655) - 4327523..4328182 (-) 660 WP_098274438.1 tetratricopeptide repeat protein -
  QNH45_RS22660 (QNH45_22660) mnmA 4328293..4329408 (-) 1116 WP_076540380.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH45_RS22665 (QNH45_22665) - 4329425..4330570 (-) 1146 WP_283882856.1 cysteine desulfurase family protein -
  QNH45_RS22670 (QNH45_22670) - 4330606..4331022 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87286.83 Da        Isoelectric Point: 5.3238

>NTDB_id=835838 QNH45_RS22650 WP_283882851.1 4325091..4327427(-) (recD2) [Bacillus wiedmannii strain LN15]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKNQLVRETMSLLNNQEGRVTEEDIVACVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGQIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPANIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVDVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQELQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=835838 QNH45_RS22650 WP_283882851.1 4325091..4327427(-) (recD2) [Bacillus wiedmannii strain LN15]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAGACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCTGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTCGGGGAACATGCTATTTCTAAAATTATGGATG
ATCCTGACGCGTTAAATGGTGTTGTCAACAAGCAAAAAGCGCAAGAAATATATGAGACGATTGTTGAACATCAAGGACTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCATATAAGCTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCTGATGATA
TAGGACGTGCGTTAGGGATATCGGGTAATCATGACGACCGTGTACGTGCGGGGTGTTTTTATACGCTAGAGAACGTTTCA
CTGCAGCTTGGTCATGTTTATATGGGGAAAAATCAACTTGTTAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACCGAGGAAGACATTGTAGCTTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTTATCATAGAAGAAGAACGAGTGT
ATTTAGCATCGTTATTCTACTCAGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAGGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTCAAATTGAAGAACAACTGAACGTACAGTATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCGCTTCATAAACCGATGATGTTATTGACGGGTGGACCAGGAACGGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCATCACTGCACGGATTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCCCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACGGATCCGGTACAAGGGAAATTGCTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGGCTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGACAAGTGTTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCTGTTATTCAACTCGCTCATGCGATAAAAAATGGAACGCTCCCGCCAG
ATTTAGCACAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGACGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGGTTTAGCGCAAGGGATGTACAAGTACTGGCCCCGATGTACCGTGGACCTGCCGGTATTAA
TGTGCTAAACGAAGCGTTGCAAGAAGTGTTTAACCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTACTACAACTCGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAATGTTGAACAACAAGATATGATTATCGTTTCATTTGATGGAATTGAAGTAACGTATAC
AAAGCCAGACTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAGTCGCAAGGTAGTGAGTTCCCAATCGTGA
TTATGCCGATAGTAAAAAGTTACAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCCGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
GAGTCGCTTGCAAGAATTACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.637

100

0.576