Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QNH45_RS19680 Genome accession   NZ_CP126099
Coordinates   3790781..3791560 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus wiedmannii strain LN15     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3744191..3794536 3790781..3791560 within 0


Gene organization within MGE regions


Location: 3744191..3794536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH45_RS19380 (QNH45_19380) - 3745039..3745110 (+) 72 WP_235632596.1 excalibur calcium-binding domain-containing protein -
  QNH45_RS19385 (QNH45_19385) - 3745498..3745845 (+) 348 WP_283882319.1 hypothetical protein -
  QNH45_RS19390 (QNH45_19390) - 3745758..3746141 (+) 384 WP_283882320.1 hypothetical protein -
  QNH45_RS19395 (QNH45_19395) - 3746126..3746278 (+) 153 Protein_3756 hypothetical protein -
  QNH45_RS19400 (QNH45_19400) - 3746423..3746530 (+) 108 Protein_3757 hypothetical protein -
  QNH45_RS19405 (QNH45_19405) - 3746503..3746691 (+) 189 WP_349643654.1 NlpC/P60 family protein -
  QNH45_RS28195 - 3746892..3747239 (-) 348 WP_349643655.1 3D domain-containing protein -
  QNH45_RS19415 (QNH45_19415) - 3747243..3747395 (-) 153 Protein_3760 cell surface protein -
  QNH45_RS19420 (QNH45_19420) - 3747380..3747763 (-) 384 WP_283882320.1 hypothetical protein -
  QNH45_RS19425 (QNH45_19425) - 3747676..3748023 (-) 348 WP_283882322.1 hypothetical protein -
  QNH45_RS19430 (QNH45_19430) - 3748097..3748672 (-) 576 WP_283882324.1 peptidoglycan DD-metalloendopeptidase family protein -
  QNH45_RS19435 (QNH45_19435) - 3748674..3748943 (-) 270 WP_283882325.1 hypothetical protein -
  QNH45_RS19440 (QNH45_19440) - 3748964..3749311 (-) 348 WP_283882327.1 hypothetical protein -
  QNH45_RS19445 (QNH45_19445) - 3749548..3750090 (-) 543 WP_283882328.1 site-specific integrase -
  QNH45_RS19450 (QNH45_19450) - 3750087..3750557 (-) 471 WP_283882329.1 ArpU family phage packaging/lysis transcriptional regulator -
  QNH45_RS19455 (QNH45_19455) - 3750769..3751425 (-) 657 WP_048558716.1 hypothetical protein -
  QNH45_RS19460 (QNH45_19460) - 3751428..3751817 (-) 390 WP_048558717.1 hypothetical protein -
  QNH45_RS19465 (QNH45_19465) - 3751810..3752685 (-) 876 WP_048558718.1 AAA family ATPase -
  QNH45_RS19470 (QNH45_19470) - 3752830..3753021 (-) 192 WP_283882330.1 DUF3954 domain-containing protein -
  QNH45_RS19475 (QNH45_19475) - 3753096..3753458 (-) 363 WP_283882331.1 cell division protein SepF -
  QNH45_RS19480 (QNH45_19480) - 3753433..3753621 (-) 189 WP_283882332.1 hypothetical protein -
  QNH45_RS19485 (QNH45_19485) dnaB 3753624..3754946 (-) 1323 WP_016077317.1 replicative DNA helicase -
  QNH45_RS19490 (QNH45_19490) - 3754943..3755896 (-) 954 WP_283882336.1 DnaD domain protein -
  QNH45_RS19495 (QNH45_19495) - 3756176..3756460 (-) 285 WP_283882337.1 hypothetical protein -
  QNH45_RS19500 (QNH45_19500) - 3756641..3756862 (-) 222 WP_000215317.1 hypothetical protein -
  QNH45_RS19505 (QNH45_19505) - 3756876..3757463 (-) 588 WP_000537277.1 hypothetical protein -
  QNH45_RS19510 (QNH45_19510) - 3757554..3757802 (-) 249 WP_283882338.1 hypothetical protein -
  QNH45_RS19515 (QNH45_19515) - 3757858..3758049 (-) 192 WP_097826050.1 helix-turn-helix transcriptional regulator -
  QNH45_RS19520 (QNH45_19520) - 3758218..3758628 (+) 411 WP_000172329.1 helix-turn-helix transcriptional regulator -
  QNH45_RS19525 (QNH45_19525) - 3758641..3759069 (+) 429 WP_283882342.1 ImmA/IrrE family metallo-endopeptidase -
  QNH45_RS19530 (QNH45_19530) - 3759112..3759558 (+) 447 WP_283882343.1 hypothetical protein -
  QNH45_RS19535 (QNH45_19535) - 3759774..3760160 (+) 387 WP_283882345.1 hypothetical protein -
  QNH45_RS19540 (QNH45_19540) - 3760234..3761079 (+) 846 WP_098058438.1 hypothetical protein -
  QNH45_RS19545 (QNH45_19545) - 3761169..3762716 (+) 1548 WP_242294614.1 recombinase family protein -
  QNH45_RS19550 (QNH45_19550) dpaB 3762749..3763174 (-) 426 Protein_3787 dipicolinate synthase subunit B -
  QNH45_RS19555 (QNH45_19555) dpaA 3763171..3764073 (-) 903 WP_000954740.1 dipicolinic acid synthetase subunit A -
  QNH45_RS19560 (QNH45_19560) - 3764347..3764598 (-) 252 WP_046956495.1 YlmC/YmxH family sporulation protein -
  QNH45_RS19565 (QNH45_19565) - 3764728..3765969 (-) 1242 WP_283882353.1 pitrilysin family protein -
  QNH45_RS19570 (QNH45_19570) - 3766056..3766955 (-) 900 WP_283882354.1 polysaccharide deacetylase family protein -
  QNH45_RS19575 (QNH45_19575) pnp 3767108..3769246 (-) 2139 WP_046957398.1 polyribonucleotide nucleotidyltransferase -
  QNH45_RS19580 (QNH45_19580) rpsO 3769407..3769676 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  QNH45_RS19585 (QNH45_19585) ribF 3769777..3770748 (-) 972 WP_000766716.1 bifunctional riboflavin kinase/FAD synthetase -
  QNH45_RS19590 (QNH45_19590) truB 3770792..3771715 (-) 924 WP_283882356.1 tRNA pseudouridine(55) synthase TruB -
  QNH45_RS19595 (QNH45_19595) rbfA 3771802..3772158 (-) 357 WP_000776445.1 30S ribosome-binding factor RbfA -
  QNH45_RS19600 (QNH45_19600) - 3772174..3772455 (-) 282 WP_000582364.1 DUF503 family protein -
  QNH45_RS19605 (QNH45_19605) infB 3772452..3774512 (-) 2061 WP_000036353.1 translation initiation factor IF-2 -
  QNH45_RS19610 (QNH45_19610) - 3774517..3774828 (-) 312 WP_001286521.1 YlxQ family RNA-binding protein -
  QNH45_RS19615 (QNH45_19615) - 3774829..3775101 (-) 273 WP_000071127.1 YlxR family protein -
  QNH45_RS19620 (QNH45_19620) nusA 3775113..3776219 (-) 1107 WP_000102596.1 transcription termination factor NusA -
  QNH45_RS19625 (QNH45_19625) rimP 3776237..3776707 (-) 471 WP_000359098.1 ribosome maturation factor RimP -
  QNH45_RS19630 (QNH45_19630) - 3777041..3781342 (-) 4302 WP_283882357.1 PolC-type DNA polymerase III -
  QNH45_RS19635 (QNH45_19635) - 3781467..3783167 (-) 1701 WP_106101718.1 proline--tRNA ligase -
  QNH45_RS19640 (QNH45_19640) rseP 3783277..3784533 (-) 1257 WP_001090237.1 RIP metalloprotease RseP -
  QNH45_RS19645 (QNH45_19645) dxr 3784551..3785693 (-) 1143 WP_000790368.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  QNH45_RS19650 (QNH45_19650) cdsA 3785717..3786508 (-) 792 WP_283882363.1 phosphatidate cytidylyltransferase -
  QNH45_RS19655 (QNH45_19655) uppS 3786526..3787302 (-) 777 WP_097857819.1 isoprenyl transferase -
  QNH45_RS19660 (QNH45_19660) frr 3787388..3787945 (-) 558 WP_000531506.1 ribosome recycling factor -
  QNH45_RS19665 (QNH45_19665) pyrH 3787948..3788670 (-) 723 WP_000042667.1 UMP kinase -
  QNH45_RS19670 (QNH45_19670) tsf 3788737..3789624 (-) 888 WP_001018585.1 translation elongation factor Ts -
  QNH45_RS19675 (QNH45_19675) rpsB 3789728..3790429 (-) 702 WP_000111484.1 30S ribosomal protein S2 -
  QNH45_RS19680 (QNH45_19680) codY 3790781..3791560 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QNH45_RS19685 (QNH45_19685) hslU 3791638..3793029 (-) 1392 WP_283882366.1 ATP-dependent protease ATPase subunit HslU -
  QNH45_RS19690 (QNH45_19690) hslV 3793052..3793594 (-) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  QNH45_RS19695 (QNH45_19695) xerC 3793637..3794536 (-) 900 WP_283882368.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=835831 QNH45_RS19680 WP_000421290.1 3790781..3791560(-) (codY) [Bacillus wiedmannii strain LN15]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=835831 QNH45_RS19680 WP_000421290.1 3790781..3791560(-) (codY) [Bacillus wiedmannii strain LN15]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCGGAAGAATACACGCAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459