Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH16_RS17755 Genome accession   NZ_CP126098
Coordinates   3729018..3731393 (-) Length   791 a.a.
NCBI ID   WP_283866132.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LC22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3724018..3736393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH16_RS17740 (QNH16_17740) dtd 3725541..3725984 (-) 444 WP_053535817.1 D-aminoacyl-tRNA deacylase -
  QNH16_RS17745 (QNH16_17745) - 3726000..3728198 (-) 2199 WP_034308787.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH16_RS17750 (QNH16_17750) - 3728515..3729027 (-) 513 WP_034308789.1 adenine phosphoribosyltransferase -
  QNH16_RS17755 (QNH16_17755) recJ 3729018..3731393 (-) 2376 WP_283866132.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH16_RS17760 (QNH16_17760) secDF 3731539..3733800 (-) 2262 WP_283866133.1 protein translocase subunit SecDF -
  QNH16_RS17765 (QNH16_17765) - 3733997..3734305 (-) 309 WP_081088676.1 post-transcriptional regulator -
  QNH16_RS17770 (QNH16_17770) spoVB 3734474..3736036 (+) 1563 WP_283866134.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88963.56 Da        Isoelectric Point: 4.8282

>NTDB_id=835782 QNH16_RS17755 WP_283866132.1 3729018..3731393(-) (recJ) [Peribacillus frigoritolerans strain LC22]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVAEAKLAAEL
GMDYILTDHHEPGPQLPEALAIIHPKLEGSTYPFKDLAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSASLEEAMELANEINDINKE
RQEMVAAMAEEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDRDKGLAKGSARSIVGFDLF
QSLSQCREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEELNEEDFTPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGEKHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVDHWQLFDYRGKGQAEKWLADIPAQNRKIVIFSEDIYSRYPFLQNHPDLVHIENELDAEQLDCFEGHLVLMDMPPS
REYLKRVIAKKNPSRIYAHFSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=835782 QNH16_RS17755 WP_283866132.1 3729018..3731393(-) (recJ) [Peribacillus frigoritolerans strain LC22]
ATGTTAAAGCCAAAAACCCGGTGGAACTTGCGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCGTTTTTATTTGTAAAAA
ATCAAACTTTTCATGACCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAAAGAAGCGATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGATGGCGTGACATCGACCACCGTGATGATGACCGCGCTGACGAGATT
GGGGGCCGATGTTGATTTTTATATCCCGAATCGGTTTACTGAAGGATATGGTCCGAATCCGATGGCATTCCGCCTTGCAG
CCGAGCAAGGTGTGAAGGTATTAATAACCGTAGATACCGGAATTTCCGCAGTCGCTGAAGCGAAACTTGCCGCCGAGCTG
GGCATGGATTATATTTTGACCGATCACCATGAACCGGGACCGCAATTGCCTGAGGCATTGGCGATCATCCATCCTAAACT
TGAGGGCAGTACCTATCCATTTAAAGACCTGGCCGGAGTAGGGGTCGCATTTAAGCTTGCACACGCCTTGCTTGGGGAAT
TGCCTGAAGATTTGCTAGAAATTGCGGCAATCGGGACGATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGATTGACTCGCCGCCCGGGACTTGTTGCGTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCAATGGCACCGAGGATCAATGCTGTCGGCCGCCTTGGAGATGCCGATC
CCGCTGTTGATTTATTGATGTCCGCAAGTCTCGAAGAAGCAATGGAACTTGCTAATGAAATCAATGATATCAATAAAGAG
CGGCAGGAAATGGTTGCAGCAATGGCTGAGGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCGGAGTCCAATGGCGT
GCTCATAATCGGCAGGGAAGGCTGGAATGCCGGAGTTGTGGGGATTGTGGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CGACGATTGTATTGAGCTATGATCGGGATAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGTAGGTTTCGATCTTTTT
CAAAGTCTTTCCCAATGCCGTGAAATGCTGCCTCATTTCGGTGGACATCCTATGGCAGCTGGAATGACGTTGAAAATAGA
AGATGTTCAGGAGCTTAGGGACCGTATGAACTTGATTGCGAAGGAAGAACTGAATGAAGAGGACTTCACACCGATTACAA
ACTTGGACGGTGCTACGACTTTAGCTGAAGTTTCCATTCAAACGATTCAGGAAATGAGCTTGCTTGCACCATTTGGGGTT
ACGAATCCCAAGCCGAAGATTTTGATAGATTCCGTACAACTATCAAGTGTCCGTAAAATTGGTGCCAACCAAAATCACTT
GAAGGTTCAGCTGGAAGATGGTGAAAAACACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCATGCTGAAGTTTCGGTGATTGGAGAGCTCTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGGACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGCACAAAACCGGAAAATCGTCATTTTCTCGGAAGATATTTATAGCAGATATCCATTTTTGCAAAACCATCCAGATCTCG
TTCATATCGAGAATGAACTGGATGCTGAGCAGCTCGACTGCTTCGAAGGGCATTTGGTGCTCATGGACATGCCGCCGTCC
AGGGAATATTTGAAGCGGGTGATTGCCAAAAAGAACCCTTCCCGTATCTACGCTCATTTTTCCCATGAACAGGACCATTT
CTTAAGTACGATGCCGACAAGGGATCATTTTAAATGGTTTTATGCCTTCCTTGCCAAGAAGGGTCCGCTTGATGTGAAAA
GATATGGTGATGACCTGGCCAAATATCGCGGCTGGTCAAGAGATACAGTGGATTTCATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAAAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(310-437)

RecJ OB domain (RecJ_OB)

(456-562)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.981

100

0.551