Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QNK06_RS08750 Genome accession   NZ_CP126097
Coordinates   1660720..1661499 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain KF24     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1655720..1666499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS08730 (QNK06_08730) trmFO 1656413..1657720 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QNK06_RS08735 (QNK06_08735) xerC 1657788..1658702 (+) 915 WP_172861369.1 tyrosine recombinase XerC -
  QNK06_RS08740 (QNK06_08740) clpQ 1658715..1659260 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  QNK06_RS08745 (QNK06_08745) hslU 1659268..1660680 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  QNK06_RS08750 (QNK06_08750) codY 1660720..1661499 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QNK06_RS08755 (QNK06_08755) flgB 1661879..1662268 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  QNK06_RS08760 (QNK06_08760) flgC 1662268..1662720 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  QNK06_RS08765 (QNK06_08765) fliE 1662731..1663051 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  QNK06_RS08770 (QNK06_08770) fliF 1663097..1664707 (+) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  QNK06_RS08775 (QNK06_08775) fliG 1664720..1665736 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  QNK06_RS08780 (QNK06_08780) fliH 1665729..1666481 (+) 753 WP_049140191.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=835709 QNK06_RS08750 WP_003220850.1 1660720..1661499(+) (codY) [Bacillus subtilis strain KF24]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=835709 QNK06_RS08750 WP_003220850.1 1660720..1661499(+) (codY) [Bacillus subtilis strain KF24]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467