Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QNH34_RS08000 Genome accession   NZ_CP126096
Coordinates   1578922..1579701 (+) Length   259 a.a.
NCBI ID   WP_041108981.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G6S2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1573922..1584701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH34_RS07980 (QNH34_07980) trmFO 1574626..1575930 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QNH34_RS07985 (QNH34_07985) xerC 1575993..1576910 (+) 918 WP_039166693.1 tyrosine recombinase XerC -
  QNH34_RS07990 (QNH34_07990) hslV 1576925..1577470 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  QNH34_RS07995 (QNH34_07995) hslU 1577487..1578887 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  QNH34_RS08000 (QNH34_08000) codY 1578922..1579701 (+) 780 WP_041108981.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QNH34_RS08005 (QNH34_08005) flgB 1579992..1580381 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  QNH34_RS08010 (QNH34_08010) flgC 1580381..1580833 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  QNH34_RS08015 (QNH34_08015) fliE 1580845..1581162 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  QNH34_RS08020 (QNH34_08020) fliF 1581213..1582805 (+) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  QNH34_RS08025 (QNH34_08025) fliG 1582817..1583833 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  QNH34_RS08030 (QNH34_08030) fliH 1583826..1584590 (+) 765 WP_017367245.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29003.26 Da        Isoelectric Point: 4.7176

>NTDB_id=835641 QNH34_RS08000 WP_041108981.1 1578922..1579701(+) (codY) [Bacillus altitudinis strain G6S2]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=835641 QNH34_RS08000 WP_041108981.1 1578922..1579701(+) (codY) [Bacillus altitudinis strain G6S2]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTAGGGATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGTTCTCTTTCATATAGTGAGCTTGAGGCGAT
TGAGCATATCTTTGAAGAACTTGATGGCAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCCCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467