Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   U8P18_RS01315 Genome accession   NZ_CP141061
Coordinates   300205..300969 (-) Length   254 a.a.
NCBI ID   WP_001136218.1    Uniprot ID   -
Organism   Escherichia coli strain KE55     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 295205..305969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8P18_RS01305 (U8P18_01305) nikR 298996..299397 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  U8P18_RS01310 (U8P18_01310) nikE 299402..300208 (-) 807 WP_000173690.1 nickel import ATP-binding protein NikE -
  U8P18_RS01315 (U8P18_01315) amiE 300205..300969 (-) 765 WP_001136218.1 nickel import ATP-binding protein NikD Regulator
  U8P18_RS01320 (U8P18_01320) nikC 300969..301802 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  U8P18_RS01325 (U8P18_01325) nikB 301799..302743 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  U8P18_RS01330 (U8P18_01330) nikA 302743..304317 (-) 1575 WP_000493127.1 nickel ABC transporter substrate-binding protein -
  U8P18_RS01335 (U8P18_01335) acpT 304428..305015 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26782.38 Da        Isoelectric Point: 6.6882

>NTDB_id=835610 U8P18_RS01315 WP_001136218.1 300205..300969(-) (amiE) [Escherichia coli strain KE55]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=835610 U8P18_RS01315 WP_001136218.1 300205..300969(-) (amiE) [Escherichia coli strain KE55]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCCGCACTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGATCTCGACGTGGTAGCACAAGCACGCATCCTCGATCTACTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398