Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH29_RS23055 Genome accession   NZ_CP126093
Coordinates   4651202..4653556 (-) Length   784 a.a.
NCBI ID   WP_283861624.1    Uniprot ID   A0AA95L4Q8
Organism   Neobacillus sp. DY30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4646202..4658556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH29_RS23040 (QNH29_23040) dtd 4647804..4648247 (-) 444 WP_283861621.1 D-aminoacyl-tRNA deacylase -
  QNH29_RS23045 (QNH29_23045) - 4648261..4650456 (-) 2196 WP_283861622.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH29_RS23050 (QNH29_23050) - 4650690..4651202 (-) 513 WP_283861623.1 adenine phosphoribosyltransferase -
  QNH29_RS23055 (QNH29_23055) recJ 4651202..4653556 (-) 2355 WP_283861624.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH29_RS23060 (QNH29_23060) secDF 4653661..4655925 (-) 2265 WP_283861625.1 protein translocase subunit SecDF -
  QNH29_RS23065 (QNH29_23065) - 4656048..4656344 (-) 297 WP_283861626.1 post-transcriptional regulator -
  QNH29_RS23070 (QNH29_23070) spoVB 4656471..4658021 (+) 1551 WP_283861627.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87998.99 Da        Isoelectric Point: 5.5773

>NTDB_id=835482 QNH29_RS23055 WP_283861624.1 4651202..4653556(-) (recJ) [Neobacillus sp. DY30]
MLKSKTRWVVRKSDQQLVKTLENELKITPLIASLLINRGLDTVDSARYFLFGKEQFHDPYLLKGMDIAVNRIREAIEKKE
PILIFGDYDADGVSSTTVLMLTLRDLGANVQFYIPNRFTEGYGPNEPAFRRAAETGIKLIITVDTGISAINEAAIAKELG
LDLIITDHHEPGPVLPEALAIIHPKLHDSIYPFRELAGVGVAFKLAHALYGELPEHLLEIAVIGTIADLVSLKDENRLIA
KKGLEKMKVTKNKGLRALLKVAGVDIQSINEETIGFSLAPRINAVGRLENADMAVELLLTDDSSEAEALAQEMDELNKTR
QSIVNSITLEAIEEVERNYPIDSNSVLVIGKEGWNAGVIGIVASRLVEKFYRPTIVLSFDKEKGLAKGSARSIAGFDLFK
NLSECRDILPHFGGHPMAAGMTLKLEDVPDLRQRLNNLANEQLTEEDFIPVTTLDHEIKVEEVNLSSLDELNLLAPFGMD
NPKPKVLISNVQISTMRKIGSEQNHLKVMVNDNGTNLDGIGFGLGQLVDHISPASKISLIGELAVNEWNNIRKPQIFIQD
VSVESWQLFDHRGVKRIHSMVHTIPNEKRKYIIFNREQLEKIDPAIAGEAILIKDEAEAKAFDSYQANVVLVDIPPSKEL
LHHLFNGKRPARIYAYFYKESSDFFSTIPTREHFKWFYAFLLKKGPIDLGRYGDEIAKHRGWSTETITFMSKVFSELDFV
TINNGFITLNKNSQKRDLTDSITYQTKQAQYAIERDLLFSSFEQLKSWFDEIIEESVIIRGGIT

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=835482 QNH29_RS23055 WP_283861624.1 4651202..4653556(-) (recJ) [Neobacillus sp. DY30]
ATGTTAAAGTCGAAAACTAGATGGGTTGTTCGCAAATCTGATCAACAACTAGTAAAAACTCTCGAAAACGAATTGAAAAT
TACGCCGCTTATTGCGTCGCTGCTTATCAACCGAGGATTAGATACCGTTGATTCTGCACGGTATTTTTTATTTGGAAAGG
AGCAATTTCATGACCCCTATTTGTTAAAAGGCATGGATATTGCTGTTAATAGAATTCGGGAAGCTATTGAAAAGAAAGAA
CCTATATTAATATTCGGTGATTATGATGCGGATGGTGTGAGCAGTACAACGGTATTAATGCTTACCCTTAGGGATTTGGG
AGCGAATGTTCAATTTTATATTCCAAATCGTTTTACGGAAGGATATGGTCCGAACGAACCAGCCTTTCGCCGTGCAGCTG
AAACGGGAATCAAGCTGATTATCACTGTAGATACAGGCATTTCTGCCATAAACGAAGCTGCAATTGCAAAAGAACTCGGT
CTCGATTTAATTATTACCGATCACCATGAGCCGGGTCCTGTTTTACCTGAAGCACTCGCGATTATTCATCCTAAATTGCA
TGATAGTATTTACCCCTTTCGTGAACTCGCAGGGGTTGGTGTGGCCTTTAAACTAGCCCATGCACTATATGGTGAACTGC
CTGAGCACTTGTTAGAAATTGCGGTTATTGGCACTATTGCTGATTTAGTTTCGTTAAAAGATGAAAATCGCCTCATAGCT
AAAAAAGGTTTGGAAAAAATGAAAGTTACAAAGAATAAAGGTCTAAGAGCTTTATTAAAAGTGGCAGGTGTAGACATTCA
AAGCATTAACGAGGAAACAATCGGCTTTTCCCTGGCGCCAAGAATCAATGCAGTTGGCAGATTGGAAAATGCTGATATGG
CTGTAGAACTTTTGCTTACTGATGATTCATCCGAAGCGGAAGCTTTAGCACAGGAAATGGATGAATTAAATAAGACGAGA
CAATCAATCGTGAATTCCATTACCCTTGAAGCCATAGAAGAGGTTGAACGAAATTATCCCATTGATTCAAATTCTGTACT
TGTTATTGGTAAAGAAGGTTGGAATGCAGGTGTAATTGGCATCGTTGCTTCTAGATTAGTGGAAAAGTTTTACCGGCCGA
CAATCGTTCTTAGCTTTGATAAGGAAAAGGGTCTAGCGAAGGGCTCTGCTCGTAGTATTGCAGGTTTTGATTTGTTTAAA
AATCTATCGGAATGCCGGGATATTCTCCCTCATTTCGGCGGTCATCCTATGGCAGCTGGTATGACTTTAAAGTTAGAAGA
TGTACCTGACCTGCGTCAAAGATTAAATAATTTAGCCAATGAGCAGTTAACAGAGGAGGATTTTATCCCAGTTACCACAC
TGGATCATGAGATCAAAGTCGAAGAAGTTAATTTATCTTCACTGGATGAACTAAATCTCCTTGCTCCATTTGGAATGGAC
AATCCTAAGCCGAAGGTGTTAATCAGTAATGTCCAAATATCAACAATGAGAAAAATTGGATCGGAACAAAATCATTTGAA
AGTAATGGTTAATGATAATGGTACGAATTTAGACGGAATTGGTTTTGGACTCGGACAATTAGTTGACCATATTTCACCAG
CTTCAAAAATTTCATTAATTGGTGAGTTAGCCGTTAATGAGTGGAATAATATCCGTAAACCACAAATTTTTATCCAGGAT
GTGTCAGTTGAATCGTGGCAATTATTTGATCATCGCGGGGTAAAACGAATTCACTCGATGGTTCATACAATACCTAATGA
GAAGCGAAAATATATTATCTTTAACAGAGAACAGCTTGAGAAAATCGACCCAGCTATTGCGGGTGAGGCAATCCTTATTA
AAGATGAAGCAGAAGCTAAGGCATTCGATTCTTATCAGGCCAATGTCGTTCTCGTTGACATTCCGCCGTCAAAAGAGTTG
CTGCATCATTTATTTAACGGTAAACGCCCTGCTCGAATCTATGCATATTTCTATAAAGAATCGAGTGATTTCTTTAGTAC
CATTCCTACGAGAGAACACTTTAAATGGTTCTATGCATTTTTGTTAAAAAAAGGGCCGATTGATTTGGGGCGTTATGGGG
ATGAGATTGCTAAGCACCGCGGCTGGTCAACGGAAACCATAACCTTTATGTCTAAAGTGTTTTCTGAACTAGATTTTGTT
ACAATAAACAATGGATTTATTACTTTGAATAAAAATTCACAAAAGCGTGACCTTACTGATTCAATTACGTACCAAACCAA
ACAGGCTCAATATGCAATTGAAAGGGATTTATTATTTTCATCCTTTGAGCAATTAAAGAGCTGGTTTGACGAGATTATTG
AAGAATCAGTTATTATCCGAGGAGGAATTACGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-225)

RecJ OB domain (RecJ_OB)

(455-560)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

DHHA1 domain (DHHA1)

(311-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.598

99.107

0.551