Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH29_RS22970 Genome accession   NZ_CP126093
Coordinates   4631054..4633465 (-) Length   803 a.a.
NCBI ID   WP_283861609.1    Uniprot ID   A0AA95L4P8
Organism   Neobacillus sp. DY30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4626054..4638465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH29_RS22950 (QNH29_22950) - 4628951..4630036 (-) 1086 WP_283861607.1 AI-2E family transporter -
  QNH29_RS22955 (QNH29_22955) - 4630130..4630264 (-) 135 WP_283861608.1 YrzQ family protein -
  QNH29_RS22960 (QNH29_22960) - 4630342..4630533 (-) 192 WP_192649969.1 hypothetical protein -
  QNH29_RS22965 (QNH29_22965) - 4630546..4631061 (-) 516 WP_349654869.1 PRC-barrel domain-containing protein -
  QNH29_RS22970 (QNH29_22970) recD2 4631054..4633465 (-) 2412 WP_283861609.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH29_RS22975 (QNH29_22975) - 4633500..4634153 (-) 654 WP_283861610.1 tetratricopeptide repeat protein -
  QNH29_RS22980 (QNH29_22980) mnmA 4634440..4635558 (-) 1119 WP_283861611.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH29_RS22985 (QNH29_22985) - 4635595..4636737 (-) 1143 WP_283861612.1 cysteine desulfurase family protein -
  QNH29_RS22990 (QNH29_22990) - 4636782..4637201 (-) 420 WP_283861613.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 803 a.a.        Molecular weight: 90730.73 Da        Isoelectric Point: 4.8947

>NTDB_id=835481 QNH29_RS22970 WP_283861609.1 4631054..4633465(-) (recD2) [Neobacillus sp. DY30]
MDKQSSLDLFAEQGKFVKGRHLVTIFHNEQNLYTVLRIRVEETNHEYEDKEAVITGYFPKIHEQETYIFFGEFKDHPKFG
MQFQTKHFRKDIPQTKQGVAAYLSSEMFKGIGKKTAENIVETLGENAISKILNQPSLLDSVPKLPPDKAKMLYDTLMEHQ
GLEQVMVALNQYGFGPQLSMRMYQTYKDETLEIIQKNPYKLVEDIEGIGFGRADELGYQLGISGNHPDRIKAACFYTLEN
ESMQTGHVYVHAEDLLIQVKNLLEENKRDQIEFSDISTEILNLEEEGKIVGEEKRVYLPSLYFAEKGLVTSIKKILEQTQ
YKDQFPESEFLLALGNLEERLKVQYAPTQREAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEPKDYHKKG
EPFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGLNGTEGYDHDEGSPLEGKILIVDETSMLDIWLANQLFKALPDTIQV
ILVGDEDQLPSVGPGQVLKDLLRSEVVPTVRLTDIYRQAEGSSIIELAHDIKKGFLPANVTMKQDDRSFIKCSTAQIPQV
IEKVALNAKSKGYSAKDIQVLAPMYRGPAGIDRLNVLLQEIFNPNPDGTRKELAFGEVKYRIGDKVLQLVNQPESNVFNG
DIGEIISIIYAKENTEKQDMVYISFEGNEVEYTRQDLNQITHAYCCSVHKSQGSEFPIVILPITRSYFRMLRRNLIYTAI
TRSKQSLILCGEEDALRMGVERADEQSRQTTLSQKLQEMIAVKVPDEELPVDETTLSAEELLMQVNPMIGMENVTPYDFM
VND

Nucleotide


Download         Length: 2412 bp        

>NTDB_id=835481 QNH29_RS22970 WP_283861609.1 4631054..4633465(-) (recD2) [Neobacillus sp. DY30]
ATGGATAAGCAAAGCTCACTTGATTTATTTGCTGAGCAAGGAAAGTTTGTAAAAGGCAGACACCTTGTTACGATTTTTCA
TAATGAGCAAAATCTCTACACAGTATTAAGAATACGTGTCGAAGAAACGAATCATGAATATGAAGACAAAGAGGCCGTGA
TCACTGGCTATTTTCCTAAGATTCATGAACAGGAAACCTATATATTCTTTGGAGAGTTTAAGGACCATCCAAAGTTTGGC
ATGCAATTTCAAACAAAGCACTTCCGTAAAGATATTCCTCAAACAAAGCAAGGTGTAGCAGCTTATTTATCAAGTGAAAT
GTTTAAAGGGATCGGGAAGAAAACAGCAGAAAACATAGTCGAAACATTAGGAGAAAATGCGATTTCAAAAATATTAAATC
AGCCTTCCTTACTTGATTCTGTCCCGAAGCTTCCTCCGGATAAAGCAAAAATGCTCTATGATACCTTGATGGAGCACCAG
GGTTTGGAGCAGGTAATGGTTGCCTTAAATCAATATGGATTTGGACCGCAGCTTTCAATGAGAATGTATCAAACCTATAA
GGATGAAACCCTGGAGATTATCCAAAAGAATCCCTATAAACTCGTAGAGGATATCGAGGGGATTGGATTTGGCCGGGCTG
ACGAACTGGGATATCAACTTGGAATTTCAGGGAATCACCCAGACAGGATAAAAGCAGCCTGCTTTTATACACTAGAGAAC
GAGAGCATGCAGACTGGGCATGTATATGTTCATGCAGAGGATTTGTTAATACAGGTTAAAAATTTGCTAGAAGAGAATAA
ACGCGATCAAATTGAATTCAGCGATATTTCAACAGAGATATTGAATCTCGAAGAAGAGGGAAAAATAGTTGGGGAAGAAA
AGCGCGTCTATCTTCCTTCTTTATATTTTGCTGAAAAAGGGTTAGTAACAAGTATAAAAAAAATACTAGAACAAACCCAA
TATAAAGATCAATTTCCTGAATCCGAATTTTTGCTGGCGTTAGGAAATCTTGAGGAAAGACTAAAGGTACAATATGCCCC
AACCCAAAGGGAAGCAATACAAACAGCGTTAATGTCTCCCATGTTAATTCTTACAGGTGGTCCTGGAACCGGTAAAACAA
CCGTTATAAAAGGGATTGTTGAGCTTTATGCAGAATTGCACGGCTGTTCGTTGGAACCTAAAGATTATCATAAAAAGGGT
GAACCCTTTCCTTTTTTGCTTGCAGCCCCAACAGGAAGAGCAGCAAAAAGGATGAGTGAATCAACCGGACTACCTGCTGT
AACGATTCATCGCTTACTAGGCTTAAACGGGACAGAAGGATATGATCACGATGAGGGTAGCCCTCTTGAAGGGAAGATTC
TCATTGTCGATGAGACATCCATGCTTGACATTTGGTTAGCAAATCAATTGTTTAAGGCACTGCCAGATACCATTCAAGTC
ATTCTCGTCGGTGATGAGGATCAGCTCCCGTCTGTTGGACCAGGTCAAGTACTTAAGGATTTATTGAGATCAGAGGTTGT
CCCGACGGTAAGATTAACGGATATTTATCGTCAGGCAGAAGGTTCCTCTATTATTGAATTAGCACATGATATAAAAAAAG
GATTTTTGCCAGCGAACGTTACTATGAAGCAGGATGACCGATCCTTTATCAAATGTTCAACCGCTCAGATTCCTCAAGTG
ATTGAAAAGGTTGCACTAAATGCGAAGAGTAAAGGTTATTCTGCAAAGGATATTCAAGTGTTAGCACCAATGTACAGAGG
TCCAGCGGGGATTGATCGGTTAAATGTTTTATTACAAGAAATTTTCAATCCAAATCCTGATGGTACACGGAAGGAACTTG
CATTTGGTGAAGTAAAATACCGTATTGGTGATAAAGTACTTCAACTTGTAAACCAGCCGGAAAGCAATGTCTTTAACGGA
GATATTGGAGAAATCATTTCAATTATCTATGCAAAAGAAAATACGGAAAAACAAGATATGGTCTATATTTCCTTCGAAGG
CAATGAAGTCGAATATACACGACAGGATTTGAATCAAATTACGCATGCCTATTGCTGCTCCGTACATAAATCTCAGGGCA
GTGAATTTCCTATCGTCATTCTCCCTATTACAAGAAGTTATTTTCGAATGTTGAGAAGAAACCTCATCTATACAGCGATC
ACGAGGAGTAAGCAGTCACTAATCTTATGTGGCGAAGAGGACGCACTTAGGATGGGTGTTGAAAGAGCTGATGAACAAAG
CAGGCAAACGACATTATCTCAAAAACTCCAAGAAATGATTGCAGTCAAAGTACCTGATGAAGAACTGCCTGTTGACGAAA
CAACATTATCTGCAGAGGAATTATTAATGCAGGTTAACCCAATGATTGGGATGGAAAACGTTACACCTTATGATTTTATG
GTAAATGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-663)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.453

98.506

0.615