Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH50_RS18060 Genome accession   NZ_CP126092
Coordinates   3744325..3746700 (-) Length   791 a.a.
NCBI ID   WP_283932000.1    Uniprot ID   -
Organism   Peribacillus simplex strain D9_B_73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3739325..3751700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH50_RS18045 (QNH50_18045) dtd 3740845..3741288 (-) 444 WP_098369662.1 D-aminoacyl-tRNA deacylase -
  QNH50_RS18050 (QNH50_18050) - 3741304..3743502 (-) 2199 WP_230303669.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH50_RS18055 (QNH50_18055) - 3743822..3744334 (-) 513 WP_061464220.1 adenine phosphoribosyltransferase -
  QNH50_RS18060 (QNH50_18060) recJ 3744325..3746700 (-) 2376 WP_283932000.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH50_RS18065 (QNH50_18065) secDF 3746836..3749097 (-) 2262 WP_283932001.1 protein translocase subunit SecDF -
  QNH50_RS18070 (QNH50_18070) - 3749293..3749598 (-) 306 WP_179890971.1 post-transcriptional regulator -
  QNH50_RS18075 (QNH50_18075) spoVB 3749766..3751328 (+) 1563 WP_230303783.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89010.43 Da        Isoelectric Point: 4.7992

>NTDB_id=835423 QNH50_RS18060 WP_283932000.1 3744325..3746700(-) (recJ) [Peribacillus simplex strain D9_B_73]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIREAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVDEAKLAGEL
GMDYILTDHHEPGPELPEALAIIHPKLEDSSYPFKDLAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSQSLEEATELANEINDINKE
RQEMVAAMAEEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDREKGLAKGSARSIAGFDLF
QSLSACREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEQLNEEDFTPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVSLEDGENHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDISVNHWQLFDYRGKGQAEKWLADIPVQNRKIVIFSEDVFTRYPFLQNHPDLVHIKNELDAEQLDCFEGHLVFMDMPPS
REYLKRVIANKNPSRIYAHFSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=835423 QNH50_RS18060 WP_283932000.1 3744325..3746700(-) (recJ) [Peribacillus simplex strain D9_B_73]
ATGTTAAAGCCAAAAACCCGGTGGAACTTACGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCATTTTTATTTGTAAAAA
ATCAAACTTTTCATGATCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAGAGAAGCGATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGATGGCGTGACATCGACCACAGTGATGATGACGGCGCTAACGAGATT
GGGGGCCGATGTTGACTTTTATATCCCAAATCGGTTTACAGAAGGATATGGTCCGAATCCGATGGCATTCCGCCTTGCAG
CCGAGCAAGGGGTGAAGGTATTAATAACCGTCGATACCGGAATTTCTGCAGTCGATGAAGCGAAACTTGCCGGCGAGCTT
GGCATGGATTATATTTTGACCGACCACCATGAACCAGGACCGGAACTGCCTGAGGCATTGGCGATCATCCATCCTAAACT
TGAGGACAGTTCCTATCCATTTAAAGACCTTGCCGGAGTAGGGGTCGCTTTTAAGCTGGCACACGCCTTGCTTGGGGAAT
TGCCTGAGGATTTGCTAGAGATAGCGGCAATCGGCACGATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGTTTGACGCGCCGCCCGGGACTTGTCGCGTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCGATGGCACCGCGGATCAATGCTGTCGGGCGCCTTGGAGATGCCGATC
CCGCTGTCGATTTATTGATGTCACAAAGTCTGGAAGAAGCGACGGAGCTTGCCAATGAAATCAATGATATCAATAAAGAG
CGACAGGAAATGGTTGCAGCGATGGCGGAAGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCGGAGTCCAATGGCGT
GCTCATCATCGGCAGGGAAGGCTGGAACGCCGGAGTTGTGGGGATTGTGGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CCACGATTGTATTGAGCTATGACCGGGAAAAGGGATTAGCTAAAGGATCTGCCCGGAGCATCGCCGGTTTCGATCTTTTT
CAAAGTCTTTCCGCCTGCCGTGAAATGCTGCCTCATTTCGGTGGACATCCGATGGCTGCTGGAATGACCTTGAAAATTGA
AGATGTTCAGGAGCTCAGGGACCGCATGAACTTGATTGCGAAGGAACAACTGAACGAAGAGGACTTCACACCCATTACAA
ACTTGGACGGGGCAACGACTTTAGCTGAAGTTTCCATTCAAACGATTCAGGAAATGAGCTTGCTGGCGCCATTTGGGGTT
ACGAATCCGAAGCCGAAGATATTGATAGATTCCGTACAGCTTTCAAGTGTCCGCAAAATTGGTGCCAACCAAAATCACTT
GAAGGTCTCGCTTGAAGATGGTGAAAACCATAAGCTTGACGGAGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCACGCTGAAGTCTCGGTTATTGGAGAGCTTTCCATCAATGAGTGGAATAATATGAAAAAGCCTCAGATCTTTGTC
CAGGATATCTCGGTAAACCACTGGCAGTTATTCGATTATCGGGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGTACAAAACCGGAAGATCGTCATTTTCTCGGAAGATGTCTTTACCAGATATCCGTTTTTACAAAACCATCCAGATCTTG
TTCATATCAAGAATGAACTGGATGCAGAGCAGCTCGACTGCTTCGAAGGTCATTTAGTATTTATGGACATGCCGCCGTCC
AGGGAATATTTGAAGCGGGTGATTGCCAATAAGAACCCTTCGCGTATCTACGCTCACTTTTCCCATGAACAGGATCATTT
CTTAAGTACGATGCCAACAAGGGATCATTTTAAATGGTTTTATGCCTTCCTTGCCAAAAAGGGTCCGCTCGACGTGAAAA
GATACGGTGATGACCTGGCCAAATATCGCGGCTGGTCAAGGGATACCGTGGATTTCATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAGAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTTAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

RecJ OB domain (RecJ_OB)

(456-562)

DHHA1 domain (DHHA1)

(310-437)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.855

100

0.55