Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH50_RS17735 Genome accession   NZ_CP126092
Coordinates   3667519..3669924 (-) Length   801 a.a.
NCBI ID   WP_283931957.1    Uniprot ID   -
Organism   Peribacillus simplex strain D9_B_73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3662519..3674924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH50_RS17710 (QNH50_17710) - 3663977..3665053 (-) 1077 WP_283931953.1 AI-2E family transporter -
  QNH50_RS17715 (QNH50_17715) - 3665281..3665496 (-) 216 WP_063233024.1 hypothetical protein -
  QNH50_RS17720 (QNH50_17720) - 3665486..3665950 (-) 465 WP_283931954.1 PRC-barrel domain-containing protein -
  QNH50_RS17725 (QNH50_17725) - 3666092..3666862 (-) 771 WP_283931955.1 TPM domain-containing protein -
  QNH50_RS17730 (QNH50_17730) - 3666862..3667428 (-) 567 WP_283931956.1 LemA family protein -
  QNH50_RS17735 (QNH50_17735) recD2 3667519..3669924 (-) 2406 WP_283931957.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH50_RS17740 (QNH50_17740) - 3669961..3670626 (-) 666 WP_283931958.1 tetratricopeptide repeat protein -
  QNH50_RS17745 (QNH50_17745) mnmA 3670749..3671864 (-) 1116 WP_283931959.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH50_RS17750 (QNH50_17750) - 3671894..3673039 (-) 1146 WP_283931960.1 cysteine desulfurase family protein -
  QNH50_RS17755 (QNH50_17755) - 3673100..3673519 (-) 420 WP_034308657.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90483.16 Da        Isoelectric Point: 4.8147

>NTDB_id=835421 QNH50_RS17735 WP_283931957.1 3667519..3669924(-) (recD2) [Peribacillus simplex strain D9_B_73]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQYHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGFYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTEEGKIVVEDQRIYPPSLYYSEKGIVTSIKRLLAQTE
YEDQFPESEFLLALGKLEERLNVSYASAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLANQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHDIKKGRLPDDVTKQQEDRSFIRCQTGQIPQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLQEVLSEEEIPVVKEEVQQQSSYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=835421 QNH50_RS17735 WP_283931957.1 3667519..3669924(-) (recD2) [Peribacillus simplex strain D9_B_73]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAATGTTCATGAAAGGAAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTAAGAATTCGCGTACATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATACCATGTAGAGCATTTTCGCAAGGATCTGCCCCAATCCAAGGAAGGCATCGTCAGTTATTTATCCGGTGACCT
GTTCAAAGGCATTGGAAAAAAAACAGCCGAGAGCATTGTTGAGACACTGGGTGAAAAGGCAATTTCCAAAATTCTGGCTC
AGCCTTCGTTACTTGATGATATCCCGAAGCTATCCGGGGAAAAGGCAAAGGGCTTCTATGATACATTAGTCGAGCATCAA
GGTCTGGAGCAGGTAATGATCGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAAATATATCAAATGTATAA
GCAGGATACGATCACGATGGTTCAGGGAAATCCGTATAAGCTCGTTGAGGATATTGAAGGGATTGGTTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTGGGCATTTCCGGCAGCCATCCCGATCGAATTAAGGCTGCGTGCTTGTATACGCTTGAATCA
CAATGCCTTCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTTTTGGAAGCGGTCAAACGTCTGCTGGAGGAAAATAA
ACGGGATCGCATTGAGTTCACGAACATTTCCTCGGAAATAATCGAATTGACGGAAGAGGGGAAAATCGTTGTCGAGGATC
AACGAATTTATCCGCCTTCACTTTACTATTCTGAAAAGGGAATTGTTACGAGCATCAAGCGGCTGCTCGCACAAACCGAG
TATGAAGACCAGTTCCCGGAATCGGAATTTTTACTGGCCCTTGGGAAGCTGGAAGAGCGTCTAAATGTTTCTTATGCCTC
AGCTCAAAAAGAGGCGATACAAACAGCCCTGCAGTCGCCCATGCTGATCTTGACGGGGGGACCTGGTACTGGGAAGACGA
CTGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGACATTAATGATTATAAAAAAGAGGGA
AGCGATCCATTTCCATTCGTTCTTGCGGCTCCTACTGGCCGTGCAGCGAAACGCATGGCCGAATCGACTGGACTCCCCGC
TGTTACGATCCACCGTTTGCTTGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGTTGGATGGCCGGA
TCGTGATCATCGATGAGGTTTCCATGGTGGATACATGGCTGGCCAATCAATTGTTTAAGGCCTTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTCGGACCTGGGCAGGTTTTAAAGGATTTGCTTGCGTCGAATTG
TGTGCCTACTGTCAGTCTGGAACATATTTATCGTCAAGCTGATGGCTCATCGATCATTGAATTAGCCCATGATATCAAAA
AAGGAAGGCTTCCGGATGATGTGACGAAGCAGCAAGAAGATCGATCGTTCATTCGCTGCCAGACCGGGCAAATCCCCCAA
GTGATCGAGAAAGTGGTTGCCAATGCCAGGACGAAGGGTTTCACGGCCAAGGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGGATTGATGCCCTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAACGGCGGGAAA
TAAAATTCGGAGATGTGATATACAGAACGGGAGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAGGGTGTCTTTAAT
GGCGATATGGGTGAAATCGTGTCCATCTTGTTCGCAAAAGAAAATACCGATCATGTCGATAAAGTAATCATATCGTTCGA
AGGCATCGAAGTGACTTACACGAAACAGGACTTGAACCAGATTACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGCGAATTCCCCATTGTCATTTTACCTGTAGTGAAAAGCTATTATCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTTTGCGGTGAAGAAGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCAAGAGGTTTTGAGTGAAGAAGAAATACCGGTGGTAAAGGAAGAGGTAC
AACAACAATCAAGTTATCTTGATATTCTCATGCATGCTGATCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

AAA domain (AAA_30)

(345-555)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.923

100

0.619