Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH18_RS14640 Genome accession   NZ_CP126091
Coordinates   2871012..2873408 (-) Length   798 a.a.
NCBI ID   WP_023855378.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2866012..2878408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS14620 (QNH18_14620) - 2868959..2870017 (-) 1059 WP_023855376.1 AI-2E family transporter -
  QNH18_RS14625 (QNH18_14625) - 2870105..2870236 (-) 132 WP_003183926.1 YrzQ family protein -
  QNH18_RS14630 (QNH18_14630) - 2870252..2870443 (-) 192 WP_016885531.1 hypothetical protein -
  QNH18_RS14635 (QNH18_14635) - 2870459..2870923 (-) 465 WP_023855377.1 PRC-barrel domain-containing protein -
  QNH18_RS14640 (QNH18_14640) recD2 2871012..2873408 (-) 2397 WP_023855378.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH18_RS14645 (QNH18_14645) - 2873460..2874110 (-) 651 WP_025811062.1 tetratricopeptide repeat protein -
  QNH18_RS14650 (QNH18_14650) mnmA 2874205..2875323 (-) 1119 WP_039072892.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH18_RS14655 (QNH18_14655) - 2875429..2876568 (-) 1140 WP_079289161.1 cysteine desulfurase family protein -
  QNH18_RS14660 (QNH18_14660) cymR 2876589..2877005 (-) 417 WP_023855382.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89761.34 Da        Isoelectric Point: 4.9434

>NTDB_id=835372 QNH18_RS14640 WP_023855378.1 2871012..2873408(-) (recD2) [Bacillus paralicheniformis strain CEW 1W]
MQRHNPDQIEMEEASFVKGTVAAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIDTRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIDGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLTAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQILAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=835372 QNH18_RS14640 WP_023855378.1 2871012..2873408(-) (recD2) [Bacillus paralicheniformis strain CEW 1W]
ATGCAGCGCCATAACCCGGACCAAATTGAAATGGAAGAAGCTTCATTTGTAAAAGGAACGGTTGCGGCTGTCATTTATCA
TAATGAAACAAACCTGTATACCGTATTAAAGGTAAAAGTGGAAGAAACATCGGAGTCTTTTGAAGACAAAACCGTTTCTG
TCACCGGTTACTTTCCTTTGATCCATGAAGACGATATCTACACTTTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTTAAAAAAGAAGTGCCGACAACGAAAGAAGGCGTGATCCAATACTTGGCCAGCGATTT
ATTTGAAGGAATCGGCAAAAAAACGGCCGAGGAAATTGTTAATAAGCTTGGGGAAGGTGCGATCAACAAAATTTTAAGCG
ACGGCGCCGTCCTGTATGATGTTCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTGCAGCAGCATCAG
GGGCTCGAACAGATTATGATCTCCTTGAGCGAATTCGGCTTCGGCCCCCAGCTGTCCATGAAAATTTATCAGGCGTATGA
AGCGGAAACGCTTGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAGGATGTCGAAGGAATCGGCTTTATCAAGGCGG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAGGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACATACATAGACACGAGACAGCTCATCATCGAGACGCAAAAACTGTTAAACCAGTCTGC
AGGTGATGAAAAAGTAACCGAGATGGATGTGGCGGACGCGATCATTTCTTTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTATTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGTCAAAAAGAAGCGATTCAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACAGGCGGACCGGGAACCGGGAAAA
CGACCGTCATTAGGGGAATCGTCGAGTTGTACAGTGAGCTGCACGGCTTAAGCTTAAATCCGGCTGATTACAAAAAGGAT
GAAACGTTTCCGTTTGTGCTCGCAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGGTTGCCGGCCGT
AACGATTCACAGGCTTCTCGGCTGGAATGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGACGGACGGCTGC
TCATCATTGATGAAACGAGCATGCTTGATATATGGCTCGCCAACCAATTGTTCAAGGCGATTCCCGACCGGATTCAGGTC
ATCATGGTCGGAGATGAAGACCAGCTTCCGTCCGTCGGTCCCGGACAGGTGCTGAGGGATCTTTTGGCATCGAATGTCAT
TCCTTCTGTCAGATTAACCGATATTTACAGGCAGGCTGAAGGCTCTTCCATCGTTGAACTGGCGCATGAAATGAAACAAG
GAAAGCTTCCGGAAAACTTGACCGCGCCGACAAAAGACCGTTCTTTCATTCGCTGCCGCCAGCAGCAGATTAAAGAAGTC
GTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGGTATTCGGCCAGGGATATTCAGATTTTGGCTCCGATGTACAGGGG
AGCAGCCGGTATCAACGAGTTAAACGCGCTTTTGCAGGGCATCCTGAATCCCCCGAAGCCGAAAGGCAGGGAAATGAAGT
ACGGCGATGTCGTGTACCGTACCGGGGATAAAGTGCTTCAGCTCGTCAACCAGCCGGAACACAACGTGTTTAACGGTGAT
ATGGGTGAGATCGTCTCGATTTTTTATGCAAAAGAAAATACGGAAAAAGAAGATATGGCCGTCGTCTCTTTCGACGGGAA
TGAAATCACCTTTACAAAAAAAGATTTTAACCAATTTACGCACGCCTATTGCTGTTCAATCCACAAATCGCAGGGCAGCG
AATTTCCGATCGTCATCCTTCCGGTTGTCAAAAGCTATTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCCATCACA
AGAAGCAAGAAATTCCTGATTTTGTGCGGGGAAGAGGAGGCCCTTGAATGGGGCGTGAAAAATAAGGAATCATCGGAAAG
GCAGACATCGCTTAAAAGAAGGCTTCAGCAGGCGGCGCATGAAGAGGATGAAGAGCTCATGGCGCTGCAAAAAGAGCTGC
CTTTTAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

81.602

100

0.817