Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QNH18_RS09065 Genome accession   NZ_CP126091
Coordinates   1791234..1792136 (+) Length   300 a.a.
NCBI ID   WP_057957852.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1786234..1797136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS09045 (QNH18_09045) - 1786886..1788583 (+) 1698 WP_035338774.1 hypothetical protein -
  QNH18_RS09050 (QNH18_09050) - 1788580..1788864 (+) 285 WP_025811381.1 FlhB-like flagellar biosynthesis protein -
  QNH18_RS09055 (QNH18_09055) sucC 1789040..1790200 (+) 1161 WP_020451378.1 ADP-forming succinate--CoA ligase subunit beta -
  QNH18_RS09060 (QNH18_09060) sucD 1790219..1791121 (+) 903 WP_256163783.1 succinate--CoA ligase subunit alpha -
  QNH18_RS09065 (QNH18_09065) dprA 1791234..1792136 (+) 903 WP_057957852.1 DNA-processing protein DprA Machinery gene
  QNH18_RS09070 (QNH18_09070) topA 1792341..1794416 (+) 2076 WP_020451381.1 type I DNA topoisomerase -
  QNH18_RS09075 (QNH18_09075) trmFO 1794492..1795796 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QNH18_RS09080 (QNH18_09080) xerC 1795863..1796777 (+) 915 WP_020451383.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33152.52 Da        Isoelectric Point: 10.0703

>NTDB_id=835355 QNH18_RS09065 WP_057957852.1 1791234..1792136(+) (dprA) [Bacillus paralicheniformis strain CEW 1W]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
AAICSPDYPASLKTIHDPPPVLFLKGDVKLLNEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTIVSGLAKGIDGLAH
QESICSKGRTIGVIAGGFNSIYPREHRQLAGQMAENHLLVSEHPPHVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLNIEDILSELPPSRTQYPEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=835355 QNH18_RS09065 WP_057957852.1 1791234..1792136(+) (dprA) [Bacillus paralicheniformis strain CEW 1W]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAAGCGGCCGGAGTCCGCATG
GCCGCCATATGTTCCCCCGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAGA
TGTTAAACTTCTCAATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTTGCACAT
CAGGAGAGCATCTGTTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAATAGCATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCCACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAGAGCGGGTCGCTC
ATCACAGCATATCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCTGGTCCGATCTTTGACGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTGCCGCCTTCACGCA
CTCAATATCCGGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.525

99.667

0.573