Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH32_RS16565 Genome accession   NZ_CP126088
Coordinates   3150429..3152792 (-) Length   787 a.a.
NCBI ID   WP_061784994.1    Uniprot ID   -
Organism   Priestia flexa strain CCW CN82     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3145429..3157792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH32_RS16545 (QNH32_16545) alaS 3145728..3148361 (-) 2634 WP_025911715.1 alanine--tRNA ligase -
  QNH32_RS16550 (QNH32_16550) - 3148760..3149821 (-) 1062 WP_025911717.1 AI-2E family transporter -
  QNH32_RS16555 (QNH32_16555) - 3149952..3150086 (-) 135 WP_076512682.1 YrzQ family protein -
  QNH32_RS16560 (QNH32_16560) - 3150108..3150299 (-) 192 WP_025911719.1 hypothetical protein -
  QNH32_RS16565 (QNH32_16565) recD2 3150429..3152792 (-) 2364 WP_061784994.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH32_RS16570 (QNH32_16570) - 3152821..3153480 (-) 660 WP_025911721.1 tetratricopeptide repeat protein -
  QNH32_RS16575 (QNH32_16575) mnmA 3153592..3154704 (-) 1113 WP_061784993.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH32_RS16580 (QNH32_16580) - 3154733..3155875 (-) 1143 WP_061784992.1 cysteine desulfurase family protein -
  QNH32_RS16585 (QNH32_16585) - 3155902..3156318 (-) 417 WP_025911725.1 Rrf2 family transcriptional regulator -
  QNH32_RS16590 (QNH32_16590) - 3156520..3157785 (+) 1266 WP_061784991.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88915.75 Da        Isoelectric Point: 4.9945

>NTDB_id=835195 QNH32_RS16565 WP_061784994.1 3150429..3152792(-) (recD2) [Priestia flexa strain CCW CN82]
MSEEVLNPLQPDEEKTYIKGTAIVTVFHNEENLYNVTRIRIKETNVSMDDKEAIVTGYFPRLNEDELYTFIGNFKEHPKF
GLQFQVEQFKKELPQSKQGVIQYLSSDLFNGIGKKTAENIVEALGERAIYRMLQDPAVLKKVSRLSADKAEKLIVQLREH
QGLEEVMVKLTDLGFGPQLSMKIFQAYKQEALEVIQTNPYQLVEDVQGIGFNRADELGRKLGLATNHPNRLRAGILYVIE
HECNQMGHVYVKAEQLYQKTGELLQKSRQEPLSEMDIIREIDALKEEKKIIIDDDKMYFPPLFYAEKGVVKAIGKLMAQT
EYEEQFPESEFLLALGELEERLGVQYAPSQREGIQKALLSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKD
EGFPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPINGKLLIVDEVSMVDLWLAHQLFKSLPASIQV
VLVGDEDQLPSVGPGQVLKDLLHSEAVPTVRLTDVYRQEEGSSIIDLAHEIKKGRLPSDLTNQQGDRSFIRCYGAQITDV
VKQVCGNAVKKGYTAKDIQVLAPMYKGPAGIDKMNEVLQELFNPASQQRRELKHGDVTYRVGDKVLQLVNQPDSNVFNGD
MGEIVSVFFAKENTEKQDMLVISFEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVT
RSKQFLILCGEEEAFQIGVNRNEDSIRQTNLQALLKEQLVDELEDPEVPFMKDANIGMENLTPYDFM

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=835195 QNH32_RS16565 WP_061784994.1 3150429..3152792(-) (recD2) [Priestia flexa strain CCW CN82]
ATGAGTGAGGAAGTTCTAAACCCTTTACAACCCGATGAAGAAAAAACGTACATAAAAGGCACGGCAATTGTCACGGTCTT
TCATAATGAAGAAAATTTGTATAACGTAACAAGAATTAGAATAAAAGAAACAAATGTATCCATGGACGATAAAGAAGCGA
TTGTTACGGGATATTTCCCCCGTTTGAACGAAGATGAACTTTACACTTTTATTGGAAACTTTAAAGAGCATCCGAAATTT
GGCCTTCAGTTTCAAGTAGAGCAATTTAAAAAAGAGCTTCCCCAGTCAAAACAAGGGGTCATTCAGTACTTATCAAGTGA
TCTCTTTAACGGTATTGGTAAAAAAACCGCAGAAAATATTGTAGAAGCACTTGGTGAACGTGCAATTTATCGAATGCTAC
AAGACCCTGCGGTATTGAAAAAGGTGTCTAGGCTATCTGCTGATAAAGCAGAAAAGCTAATCGTTCAGCTGCGAGAGCAC
CAGGGGTTAGAAGAAGTAATGGTTAAGCTGACAGATTTGGGATTTGGTCCGCAGCTTTCCATGAAAATTTTCCAAGCTTA
TAAACAAGAGGCGCTAGAAGTGATTCAAACAAACCCCTATCAGCTTGTTGAAGATGTTCAAGGAATCGGCTTTAACCGAG
CGGATGAATTAGGAAGGAAGCTAGGGTTAGCAACCAACCATCCTAACCGGCTTCGAGCTGGAATTTTATACGTTATCGAG
CATGAATGCAATCAAATGGGACACGTCTACGTGAAAGCAGAGCAATTGTATCAGAAAACGGGAGAGCTGTTACAAAAAAG
TCGTCAAGAACCGTTATCAGAAATGGATATTATACGAGAGATTGATGCACTAAAAGAAGAGAAAAAAATTATTATTGATG
ACGATAAAATGTACTTCCCACCGCTTTTTTATGCTGAAAAAGGAGTCGTTAAAGCGATTGGTAAGCTAATGGCTCAAACA
GAGTATGAAGAGCAATTTCCTGAATCAGAATTTCTTCTAGCTCTAGGGGAGTTAGAAGAGCGTCTAGGCGTGCAGTATGC
ACCTTCGCAAAGAGAAGGAATTCAAAAAGCGCTTTTATCCCCAATGCTTTTGCTTACAGGAGGACCAGGTACCGGTAAAA
CAACAGTTATAAAGGGAATTGTTGAACTTTATGCAGAGCTTCATGGCTGTTCGCTAAATCCAGGGGATTATAAAAAAGAC
GAAGGATTTCCAGTGCTGCTTGTCGCTCCTACAGGTCGAGCTGCTAAACGGATGAGCGAGGCTACTGGACTGCCAGCGGT
GACAATCCACAGACTTTTAAAGTGGAATGGACAAGAAGGGTTTGACCACAATGAAGAAAATCCAATCAATGGTAAGTTAC
TGATTGTGGACGAGGTCTCTATGGTAGATTTATGGCTTGCTCACCAGCTCTTTAAATCACTTCCAGCTAGCATCCAAGTA
GTGCTTGTAGGTGATGAAGATCAATTACCTTCAGTTGGTCCTGGTCAGGTGTTGAAAGATTTATTACATTCTGAAGCTGT
TCCTACCGTACGATTAACAGATGTATATCGCCAAGAAGAAGGCTCATCTATCATTGATTTGGCTCATGAAATTAAAAAAG
GACGTCTTCCATCCGATTTGACTAATCAGCAAGGCGATCGTTCCTTTATTCGTTGTTACGGAGCGCAAATTACAGATGTT
GTCAAACAAGTGTGCGGCAATGCTGTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTGCTGGCTCCAATGTATAAAGG
TCCAGCGGGGATTGATAAAATGAATGAAGTACTGCAAGAATTATTTAATCCAGCCTCTCAACAGCGGAGAGAGTTAAAGC
ACGGAGATGTAACATATCGTGTAGGCGATAAGGTACTTCAGCTTGTAAATCAACCTGATAGTAATGTTTTTAATGGAGAT
ATGGGTGAGATTGTGTCTGTTTTTTTCGCAAAGGAAAACACGGAAAAGCAGGATATGCTTGTTATTTCATTCGAAGGAAA
TGAAGTAACCTATACGAAACAAGACTTTAATCAGATTACGCATGCGTACTGCTGCTCTATTCATAAATCACAAGGAAGCG
AGTTTCCGATTGTGGTGTTGCCTATTGTGAAAAGTTATTATCGCATGCTCCGACGGAACCTGCTTTATACTGCCGTTACG
CGGAGCAAGCAGTTCTTGATCTTATGTGGTGAAGAAGAAGCGTTTCAAATTGGCGTAAATCGTAACGAAGACAGCATTCG
ACAGACCAATCTACAAGCCCTTCTCAAAGAGCAATTAGTTGATGAGTTAGAAGATCCTGAGGTGCCATTTATGAAAGATG
CAAATATTGGCATGGAAAACCTTACGCCGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

AAA domain (AAA_30)

(346-552)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

64.879

99.492

0.645