Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH25_RS12565 Genome accession   NZ_CP126087
Coordinates   2467350..2469674 (-) Length   774 a.a.
NCBI ID   WP_283859520.1    Uniprot ID   -
Organism   Bacillus safensis strain CEW-AP100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2462350..2474674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH25_RS12550 (QNH25_12550) dtd 2463999..2464442 (-) 444 WP_024423131.1 D-aminoacyl-tRNA deacylase -
  QNH25_RS12555 (QNH25_12555) - 2464461..2466671 (-) 2211 WP_024427858.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH25_RS12560 (QNH25_12560) - 2466814..2467326 (-) 513 WP_095409180.1 adenine phosphoribosyltransferase -
  QNH25_RS12565 (QNH25_12565) recJ 2467350..2469674 (-) 2325 WP_283859520.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH25_RS12570 (QNH25_12570) - 2469756..2470106 (-) 351 WP_283859521.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  QNH25_RS12575 (QNH25_12575) - 2470208..2470696 (-) 489 WP_283859522.1 cation:proton antiporter regulatory subunit -
  QNH25_RS12580 (QNH25_12580) secDF 2470884..2473112 (-) 2229 WP_283859523.1 protein translocase subunit SecDF -
  QNH25_RS12585 (QNH25_12585) - 2473154..2473450 (-) 297 WP_103131888.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 87107.69 Da        Isoelectric Point: 4.9556

>NTDB_id=835136 QNH25_RS12565 WP_283859520.1 2467350..2469674(-) (recJ) [Bacillus safensis strain CEW-AP100]
MLLSKMRWEYEHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFHDPFLLKGMKEAVERINKAIEEQ
ESIVIFGDYDADGVTSTSVLLHTLKERSAIVDFYIPDRFKEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEI
GLDLIITDHHEPSEELPEALAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLPVQLLDLAAIGTIADLVPLHDENRWL
AKKGLVQLRQSNRPGLKALLKEAGATLEEANEETVGFQIAPRLNAVGRIEQADPAVHLLMTEDKDEAEELARFVQELNKE
RQKIVSTITEEAIQLVEEADDDQSAIVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFH
LSKCRDILPHFGGHPMAAGMTLRADDVDLLRERLNRYANETLTEEDFIPIQRVDAVCKVDELTVEAIEEAGMLSPFGMSN
PKPFIMIEDAKLEDIRTIGANHNHIKMSLKDDDKLLDCVGFHQGKLKEEIVPGSRISVIGEMSVNEWNNRKKPQLMLKDA
RVDEWQLFDLRGKKDWEKKVSTLDSEKSLIVCFDEATKQDVDIPIHHVHAENVSSFNVHGKYVVFADVPADEQLLKQLLE
NEKPARIYTVFQRKEDHFMSSFPSRDQFKWFYGFLFKRGSFPIKEQGMELAKHRGWTKDTIIFMTKVFFELGFVKIENGV
LSIVLDAPKKDLTASASYTAKQRLMELDQTLTYSSAKELKEWLNSMMSEVSPVL

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=835136 QNH25_RS12565 WP_283859520.1 2467350..2469674(-) (recJ) [Bacillus safensis strain CEW-AP100]
ATGTTATTATCCAAAATGCGCTGGGAATATGAACATCCAAGCGAAGAAAAAGTGAAATCACTCTCTGAAAATCTGAATAT
TTCAGCGCTGACTGCATCGCTTCTCGTAAAAAGAGGACTTGAAGAAGTAGAAGAGGCGAGGTCTTTTTTATTTGATCAAA
AAGCCGAATTTCATGATCCATTCCTATTAAAAGGAATGAAAGAAGCAGTAGAGCGCATCAACAAAGCGATCGAAGAACAG
GAATCGATTGTGATCTTCGGAGACTATGATGCAGATGGTGTGACAAGTACGTCTGTACTTTTACATACATTAAAAGAGCG
GTCTGCGATAGTAGACTTTTATATTCCAGATCGATTTAAAGAAGGCTATGGGCCTAATGAACAGGCATTTCGATATATCA
AGGAGCAAGGAGCATCGCTTGTTATCACGGTCGATACAGGCATTGCTGCTGTAAATGAAGCACGTATTGCAAAAGAAATA
GGGTTAGACCTGATCATTACAGATCACCATGAACCAAGTGAGGAGCTGCCTGAGGCACTTGCCATTGTCCATCCTAAGCA
GCCGGGCTGTGAGTATCCCTTTAAAGAACTTGCTGGTGTAGGTGTCGCGTTTAAAGTGGCGCATGCACTTCTTGGGAAGC
TGCCAGTTCAGCTGTTAGATCTTGCAGCAATCGGGACAATCGCGGATCTTGTACCACTTCATGATGAGAATAGGTGGCTC
GCCAAAAAAGGTCTTGTGCAGCTTCGACAGTCGAATAGACCGGGGCTGAAAGCGTTATTGAAAGAAGCGGGAGCCACTCT
AGAAGAAGCAAACGAGGAAACGGTCGGCTTTCAAATTGCGCCAAGGCTGAATGCTGTTGGGCGAATTGAACAGGCAGATC
CAGCCGTTCATCTTCTTATGACTGAGGATAAAGATGAAGCAGAAGAGCTCGCTCGTTTTGTACAGGAACTGAATAAAGAA
CGACAAAAGATTGTCAGTACGATCACAGAAGAAGCGATTCAATTGGTGGAAGAGGCAGATGATGACCAGTCTGCGATCGT
TGTAGCGAAAGCTGGCTGGAATCCGGGCGTTGTCGGAATTGTTGCCTCTAAATTGACGGATACTTTCTCTCGTCCGGCGA
TTGTACTTGGAATAGATGAAGAGACGCAAATGGCAAAAGGATCAGCCCGGAGTATTCCTGGCTTCGATCTATTTTTCCAT
CTAAGCAAATGCCGCGACATCCTGCCGCATTTCGGCGGGCATCCGATGGCAGCAGGGATGACACTTCGAGCGGATGATGT
CGATTTACTAAGGGAAAGATTAAATCGATATGCAAATGAAACATTGACGGAAGAAGATTTTATTCCAATTCAGCGGGTCG
ATGCAGTGTGTAAGGTAGACGAATTGACGGTTGAAGCGATTGAAGAAGCGGGGATGCTGTCGCCATTCGGTATGTCAAAC
CCAAAACCGTTCATTATGATTGAAGATGCGAAGCTTGAAGATATCCGAACGATTGGGGCAAATCACAACCATATTAAAAT
GTCTCTGAAAGACGATGACAAGCTGCTTGATTGTGTCGGTTTTCACCAAGGGAAATTAAAAGAAGAAATTGTTCCAGGAA
GCCGCATCTCCGTGATTGGAGAAATGTCCGTCAATGAGTGGAATAACCGGAAAAAACCCCAGCTCATGCTAAAAGATGCA
CGAGTTGATGAATGGCAGCTGTTTGATCTGCGTGGGAAAAAGGATTGGGAGAAGAAAGTTTCGACGCTTGATTCAGAAAA
ATCTTTGATTGTCTGTTTTGATGAAGCAACAAAACAGGACGTCGATATTCCTATTCATCATGTTCATGCAGAAAATGTAT
CATCGTTTAATGTACACGGAAAGTATGTGGTCTTTGCGGATGTTCCCGCAGATGAGCAATTGCTGAAGCAGCTTTTAGAA
AACGAAAAGCCTGCCAGAATATATACGGTTTTTCAAAGAAAAGAAGATCATTTTATGTCCTCTTTCCCAAGCCGTGACCA
ATTCAAATGGTTTTATGGGTTCTTGTTTAAACGGGGAAGTTTTCCTATCAAAGAACAAGGAATGGAGCTTGCCAAACATA
GAGGCTGGACAAAAGATACAATCATTTTTATGACAAAGGTGTTTTTTGAACTCGGTTTTGTTAAAATAGAGAATGGTGTG
CTGTCAATAGTACTTGATGCCCCTAAAAAAGATTTAACGGCATCAGCGTCCTATACAGCAAAACAACGATTGATGGAACT
CGATCAAACACTAACATATTCCTCAGCTAAAGAGCTGAAGGAATGGCTGAATAGCATGATGAGCGAAGTCTCACCTGTGC
TTTGA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(312-436)

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-763)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

67.181

100

0.674