Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QNH25_RS07895 Genome accession   NZ_CP126087
Coordinates   1579432..1580211 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain CEW-AP100     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574432..1585211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH25_RS07875 (QNH25_07875) trmFO 1575136..1576440 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QNH25_RS07880 (QNH25_07880) xerC 1576503..1577420 (+) 918 WP_024424182.1 tyrosine recombinase XerC -
  QNH25_RS07885 (QNH25_07885) hslV 1577435..1577980 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  QNH25_RS07890 (QNH25_07890) hslU 1577997..1579397 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  QNH25_RS07895 (QNH25_07895) codY 1579432..1580211 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QNH25_RS07900 (QNH25_07900) flgB 1580500..1580889 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  QNH25_RS07905 (QNH25_07905) flgC 1580889..1581341 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  QNH25_RS07910 (QNH25_07910) fliE 1581353..1581670 (+) 318 WP_025092577.1 flagellar hook-basal body complex protein FliE -
  QNH25_RS07915 (QNH25_07915) fliF 1581720..1583312 (+) 1593 WP_073205172.1 flagellar basal-body MS-ring/collar protein FliF -
  QNH25_RS07920 (QNH25_07920) fliG 1583324..1584340 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  QNH25_RS07925 (QNH25_07925) fliH 1584333..1585097 (+) 765 WP_122631395.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=835123 QNH25_RS07895 WP_007499612.1 1579432..1580211(+) (codY) [Bacillus safensis strain CEW-AP100]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=835123 QNH25_RS07895 WP_007499612.1 1579432..1580211(+) (codY) [Bacillus safensis strain CEW-AP100]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCCTACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTGATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471