Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QNH25_RS05155 Genome accession   NZ_CP126087
Coordinates   1059110..1059688 (+) Length   192 a.a.
NCBI ID   WP_024425481.1    Uniprot ID   A0A1L6ZJL9
Organism   Bacillus safensis strain CEW-AP100     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054110..1064688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH25_RS05135 (QNH25_05135) - 1054605..1055900 (-) 1296 WP_024425478.1 globin-coupled sensor protein -
  QNH25_RS05140 (QNH25_05140) - 1055993..1057525 (-) 1533 WP_151862947.1 FAD-dependent oxidoreductase -
  QNH25_RS05145 (QNH25_05145) - 1057667..1058527 (+) 861 WP_216100213.1 SDR family oxidoreductase -
  QNH25_RS05150 (QNH25_05150) - 1058584..1058820 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  QNH25_RS05155 (QNH25_05155) comK 1059110..1059688 (+) 579 WP_024425481.1 competence protein ComK Regulator
  QNH25_RS05160 (QNH25_05160) - 1059988..1060470 (+) 483 WP_024425482.1 hypothetical protein -
  QNH25_RS05165 (QNH25_05165) - 1060501..1061940 (-) 1440 WP_283859989.1 PLP-dependent aminotransferase family protein -
  QNH25_RS05170 (QNH25_05170) - 1062086..1063255 (+) 1170 WP_024425484.1 MFS transporter -
  QNH25_RS05175 (QNH25_05175) - 1063321..1063599 (+) 279 WP_024425485.1 barstar family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22350.37 Da        Isoelectric Point: 8.7996

>NTDB_id=835107 QNH25_RS05155 WP_024425481.1 1059110..1059688(+) (comK) [Bacillus safensis strain CEW-AP100]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=835107 QNH25_RS05155 WP_024425481.1 1059110..1059688(+) (comK) [Bacillus safensis strain CEW-AP100]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATATCTCATAAACCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGT
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGTAACAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L6ZJL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62