Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QNH40_RS08045 Genome accession   NZ_CP126086
Coordinates   1584054..1584833 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain CES-OCA-19     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579054..1589833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH40_RS08025 (QNH40_08025) trmFO 1579758..1581062 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QNH40_RS08030 (QNH40_08030) xerC 1581125..1582042 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  QNH40_RS08035 (QNH40_08035) hslV 1582057..1582602 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  QNH40_RS08040 (QNH40_08040) hslU 1582619..1584019 (+) 1401 WP_202734500.1 HslU--HslV peptidase ATPase subunit -
  QNH40_RS08045 (QNH40_08045) codY 1584054..1584833 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QNH40_RS08050 (QNH40_08050) flgB 1585122..1585511 (+) 390 WP_202734499.1 flagellar basal body rod protein FlgB -
  QNH40_RS08055 (QNH40_08055) flgC 1585511..1585963 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  QNH40_RS08060 (QNH40_08060) fliE 1585975..1586292 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  QNH40_RS08065 (QNH40_08065) fliF 1586342..1587934 (+) 1593 WP_202734498.1 flagellar basal-body MS-ring/collar protein FliF -
  QNH40_RS08070 (QNH40_08070) fliG 1587946..1588962 (+) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  QNH40_RS08075 (QNH40_08075) fliH 1588955..1589719 (+) 765 WP_048002828.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=835062 QNH40_RS08045 WP_007499612.1 1584054..1584833(+) (codY) [Bacillus altitudinis strain CES-OCA-19]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=835062 QNH40_RS08045 WP_007499612.1 1584054..1584833(+) (codY) [Bacillus altitudinis strain CES-OCA-19]
ATGGCGTTACTACAAAAAACAAGAATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCTATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCCGGTTTGACAACGATTGTGCCAATTATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAATGAAGGGCTGCTTGTCGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471