Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH33_RS18285 Genome accession   NZ_CP126085
Coordinates   3823384..3825759 (-) Length   791 a.a.
NCBI ID   WP_283905805.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain CF20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3818384..3830759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH33_RS18270 (QNH33_18270) dtd 3819904..3820347 (-) 444 WP_053535817.1 D-aminoacyl-tRNA deacylase -
  QNH33_RS18275 (QNH33_18275) - 3820363..3822561 (-) 2199 WP_034308787.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH33_RS18280 (QNH33_18280) - 3822881..3823393 (-) 513 WP_034308789.1 adenine phosphoribosyltransferase -
  QNH33_RS18285 (QNH33_18285) recJ 3823384..3825759 (-) 2376 WP_283905805.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH33_RS18290 (QNH33_18290) secDF 3825905..3828166 (-) 2262 WP_264895233.1 protein translocase subunit SecDF -
  QNH33_RS18295 (QNH33_18295) - 3828364..3828669 (-) 306 WP_034308797.1 post-transcriptional regulator -
  QNH33_RS18300 (QNH33_18300) spoVB 3828840..3830402 (+) 1563 WP_095678481.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88951.37 Da        Isoelectric Point: 4.7698

>NTDB_id=835008 QNH33_RS18285 WP_283905805.1 3823384..3825759(-) (recJ) [Peribacillus frigoritolerans strain CF20]
MLKPKTRWNLQTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVAEAKLAAEL
GMDYILTDHHEPGPQLPEALAIIHPKLEDSTYPFKDLAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSASLEEAMELANEINDINKE
RQEMVAAMAEEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDRDKGLAKGSARSIVGFDLF
QSLSQCREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEQLNEEDFTPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGEKHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVDHWQLFDYRGKGQAEKWLADIPAQNRKIVIFSEDIYSRYPFLQNHPDLVHIENEQDAEQLDCFEGHLVFMDMPPS
REYLKRAVANKNPSRIYAHLSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=835008 QNH33_RS18285 WP_283905805.1 3823384..3825759(-) (recJ) [Peribacillus frigoritolerans strain CF20]
ATGTTAAAGCCAAAAACCCGGTGGAACTTGCAAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCGTTTTTATTTGTAAAAA
ATCAAACTTTCCATGACCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAAAGAAGCCATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGATGGCGTGACATCGACCACCGTGATGATGACGGCGCTGACGAGATT
GGGGGCCGATGTTGATTTTTATATCCCGAATCGGTTTACAGAAGGATATGGTCCGAATCCGATGGCATTCCGCCTTGCCG
CCGAGCAAGGTGTGAAGGTATTAATAACCGTCGATACCGGAATCTCCGCAGTCGCTGAAGCGAAGCTTGCCGCCGAGCTA
GGCATGGATTATATTTTGACTGACCACCATGAACCGGGACCACAACTGCCTGAGGCATTGGCGATCATCCATCCTAAACT
TGAGGACAGTACCTATCCATTTAAAGACCTTGCCGGAGTAGGGGTCGCATTTAAGCTGGCACACGCCTTGCTTGGGGAAT
TGCCTGAGGATTTGCTTGAAATAGCGGCAATCGGAACGATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGATTGACTCGCCGCCCGGGACTTGTTGCGTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCAATGGCACCGAGGATCAATGCTGTCGGGCGCCTTGGAGATGCTGATC
CCGCTGTTGATTTATTGATGTCTGCAAGTCTGGAAGAAGCAATGGAACTTGCTAATGAAATCAATGATATCAATAAAGAG
CGGCAGGAAATGGTTGCAGCAATGGCTGAGGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCGGAGTCCAATGGCGT
GCTCATCATCGGCAGGGAAGGCTGGAATGCCGGAGTTGTGGGGATTGTGGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CCACGATTGTATTGAGCTATGATCGGGATAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGTTGGTTTCGATCTTTTT
CAAAGTCTTTCCCAATGCCGTGAAATGCTGCCTCATTTCGGTGGACATCCTATGGCAGCTGGAATGACGTTGAAAATTGA
AGATGTTCAGGAGCTCAGGGACCGCATGAACTTGATTGCGAAGGAACAACTGAACGAAGAGGACTTCACACCGATTACAA
ACTTGGACGGTGCTACGACTTTAGCTGAAGTTTCCATTCAAACGATTCAGGAAATGAGCTTGCTTGCACCATTTGGGGTT
ACGAATCCCAAGCCGAAGATTTTGATAGATTCCGTACAGCTTTCAAGTGTCCGCAAAATTGGTGCCAACCAAAATCACTT
GAAGGTTCAGCTGGAAGATGGTGAAAAACACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCACGCTGAAGTTTCGGTGATTGGAGAGCTCTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGGACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGCACAAAACCGGAAGATCGTCATTTTCTCGGAAGATATTTATAGCAGATATCCATTTTTGCAAAACCATCCAGATCTCG
TTCATATCGAGAATGAACAGGATGCTGAGCAGCTCGACTGCTTCGAAGGGCATTTGGTATTCATGGACATGCCGCCGTCC
AGGGAATATTTGAAACGGGCGGTTGCCAATAAGAACCCTTCCCGTATCTACGCTCACCTTTCCCATGAACAGGACCATTT
CTTAAGTACGATGCCGACAAGGGATCATTTTAAATGGTTTTATGCCTTCCTTGCCAAGAAGGGTCCGCTTGATGTGAAAA
GATATGGTGATGACCTGGCCAAATATCGCGGCTGGTCAAGAGATACAGTGGATTTCATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAAAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

DHHA1 domain (DHHA1)

(310-437)

RecJ OB domain (RecJ_OB)

(456-562)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.729

100

0.549