Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QNH35_RS08655 Genome accession   NZ_CP126081
Coordinates   1701227..1702006 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus pumilus strain B2_10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1696227..1707006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS08635 (QNH35_08635) trmFO 1696931..1698235 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QNH35_RS08640 (QNH35_08640) xerC 1698298..1699215 (+) 918 WP_283924486.1 tyrosine recombinase XerC -
  QNH35_RS08645 (QNH35_08645) hslV 1699230..1699775 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  QNH35_RS08650 (QNH35_08650) hslU 1699792..1701192 (+) 1401 WP_106067465.1 HslU--HslV peptidase ATPase subunit -
  QNH35_RS08655 (QNH35_08655) codY 1701227..1702006 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QNH35_RS08660 (QNH35_08660) flgB 1702293..1702682 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  QNH35_RS08665 (QNH35_08665) flgC 1702682..1703134 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  QNH35_RS08670 (QNH35_08670) fliE 1703146..1703463 (+) 318 WP_065097275.1 flagellar hook-basal body complex protein FliE -
  QNH35_RS08675 (QNH35_08675) fliF 1703513..1705105 (+) 1593 WP_265208351.1 flagellar basal-body MS-ring/collar protein FliF -
  QNH35_RS08680 (QNH35_08680) fliG 1705117..1706133 (+) 1017 WP_003210883.1 flagellar motor switch protein FliG -
  QNH35_RS08685 (QNH35_08685) fliH 1706126..1706890 (+) 765 WP_003212485.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=834756 QNH35_RS08655 WP_003210838.1 1701227..1702006(+) (codY) [Bacillus pumilus strain B2_10]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=834756 QNH35_RS08655 WP_003210838.1 1701227..1702006(+) (codY) [Bacillus pumilus strain B2_10]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAGGAAAT
GGCAGAAACTTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTT
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAATCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471