Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   U2S75_RS19450 Genome accession   NZ_CP140420
Coordinates   4077773..4079038 (-) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4072773..4084038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS19420 (U2S75_19415) pncA 4072981..4073625 (-) 645 WP_064193183.1 bifunctional nicotinamidase/pyrazinamidase -
  U2S75_RS19425 (U2S75_19420) dapA 4073955..4074848 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  U2S75_RS19430 (U2S75_19425) - 4074864..4075466 (+) 603 WP_001177091.1 hypothetical protein -
  U2S75_RS19435 (U2S75_19430) purC 4075504..4076223 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  U2S75_RS19440 (U2S75_19435) - 4076416..4076619 (+) 204 WP_064193186.1 hypothetical protein -
  U2S75_RS19445 (U2S75_19440) - 4076918..4077757 (+) 840 WP_322546624.1 formate/nitrite transporter family protein -
  U2S75_RS19450 (U2S75_19445) rarA 4077773..4079038 (-) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  U2S75_RS19455 (U2S75_19450) - 4079144..4080316 (-) 1173 WP_064193184.1 PQQ-dependent sugar dehydrogenase -
  U2S75_RS19460 (U2S75_19455) - 4080426..4080884 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  U2S75_RS19465 (U2S75_19460) - 4081079..4081237 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  U2S75_RS19470 (U2S75_19465) - 4081409..4082146 (+) 738 WP_000100767.1 dienelactone hydrolase family protein -
  U2S75_RS19475 (U2S75_19470) - 4082332..4082694 (+) 363 WP_000130110.1 HIT family protein -
  U2S75_RS19480 (U2S75_19475) mutY 4082835..4083869 (+) 1035 WP_001113863.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=834701 U2S75_RS19450 WP_001285409.1 4077773..4079038(-) (rarA) [Acinetobacter baumannii strain 2023CK-00893]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=834701 U2S75_RS19450 WP_001285409.1 4077773..4079038(-) (rarA) [Acinetobacter baumannii strain 2023CK-00893]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCTGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCAT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCGCTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387