Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   U2S75_RS14115 Genome accession   NZ_CP140420
Coordinates   2932147..2933904 (-) Length   585 a.a.
NCBI ID   WP_064192851.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2927147..2938904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS14085 (U2S75_14080) - 2927736..2928287 (+) 552 WP_000913439.1 tetratricopeptide repeat protein -
  U2S75_RS14090 (U2S75_14085) - 2928309..2929208 (-) 900 WP_064192850.1 NUDIX domain-containing protein -
  U2S75_RS14095 (U2S75_14090) hemP 2929345..2929515 (+) 171 WP_000993415.1 hemin uptake protein HemP -
  U2S75_RS14100 (U2S75_14095) - 2929581..2930939 (-) 1359 WP_001257353.1 cell wall metabolism sensor histidine kinase WalK -
  U2S75_RS14105 (U2S75_14100) - 2930936..2931598 (-) 663 WP_001221450.1 response regulator transcription factor -
  U2S75_RS14110 (U2S75_14105) - 2931706..2932065 (-) 360 WP_064192852.1 NirD/YgiW/YdeI family stress tolerance protein -
  U2S75_RS14115 (U2S75_14110) pilB 2932147..2933904 (-) 1758 WP_064192851.1 GspE/PulE family protein Machinery gene
  U2S75_RS14120 (U2S75_14115) - 2934192..2935460 (+) 1269 WP_202746118.1 DUF4010 domain-containing protein -
  U2S75_RS14125 (U2S75_14120) tsaA 2935470..2936198 (-) 729 WP_079770114.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  U2S75_RS14130 (U2S75_14125) - 2936303..2937082 (+) 780 WP_000718711.1 ferredoxin--NADP reductase -
  U2S75_RS14135 (U2S75_14130) - 2937137..2938006 (-) 870 WP_064192855.1 PhzF family phenazine biosynthesis protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66845.60 Da        Isoelectric Point: 7.0123

>NTDB_id=834671 U2S75_RS14115 WP_064192851.1 2932147..2933904(-) (pilB) [Acinetobacter baumannii strain 2023CK-00893]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKDNGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNYAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPHCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMSVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGARKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=834671 U2S75_RS14115 WP_064192851.1 2932147..2933904(-) (pilB) [Acinetobacter baumannii strain 2023CK-00893]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAATGGATTGCGCATTTTAATTTAA
AAGACCAACATCATGTACAAGCACATTTAAGTTTAAACCGTCTCTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATAGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCACAAGAGTTTGCGATCCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGAATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTGGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAAGCGCTTTTACA
ACTTGGCGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTGGTAGACTGGATTTTGCAATTTGCATTTG
AACAGAGCGCCAGTGACATTCACATGGAACCGCGTAAAGACAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACCCTGACCGCCGTGATTTCTCGGATTAAAATTTTAGGGCGGCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGATTAAAAACACGTACGCCGAAAGGACAAGAAACCGAGCTACGTTTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTGTTAGTACGTTCCTTTCAGCAATTGGGTTTT
GACCAGTCTTTATTACAACAATGGCAGCGTATTACACAAAATAGTCACGGCATTATTTTAGTTACGGGGCCAACAGGTTC
TGGTAAAACCACAACGTTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTTAATTATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAGGCTGC
ACTCACAGGCCATTTAGTATTATCAACTTTACATACCAATGATGCGCCGTCTAGTTTGACCCGTTTACATGATTTGGGTG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTAGCGCAGCGCTTAGTGCGTAAGCTTTGCCCGCACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGTCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAGGAGGTGCTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)

Type II/IV secretion system protein (T2SSE)

(209-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.331

100

0.378