Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH47_RS07030 Genome accession   NZ_CP126077
Coordinates   1485004..1487316 (-) Length   770 a.a.
NCBI ID   WP_283875610.1    Uniprot ID   -
Organism   Virgibacillus halodenitrificans strain ACCC02857     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1480004..1492316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH47_RS07010 (QNH47_07010) - 1480250..1480516 (-) 267 WP_019377855.1 IreB family regulatory phosphoprotein -
  QNH47_RS07015 (QNH47_07015) alaS 1480678..1483317 (-) 2640 WP_283875605.1 alanine--tRNA ligase -
  QNH47_RS07020 (QNH47_07020) - 1483623..1484690 (-) 1068 WP_283875607.1 AI-2E family transporter -
  QNH47_RS07025 (QNH47_07025) - 1484742..1484930 (-) 189 WP_019377852.1 hypothetical protein -
  QNH47_RS07030 (QNH47_07030) recD2 1485004..1487316 (-) 2313 WP_283875610.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH47_RS07035 (QNH47_07035) - 1487336..1487998 (-) 663 WP_060678371.1 tetratricopeptide repeat protein -
  QNH47_RS07040 (QNH47_07040) mnmA 1488014..1489129 (-) 1116 WP_160805520.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH47_RS07045 (QNH47_07045) - 1489146..1490288 (-) 1143 WP_243601607.1 cysteine desulfurase family protein -
  QNH47_RS07050 (QNH47_07050) - 1490394..1490813 (-) 420 WP_019377847.1 Rrf2 family transcriptional regulator -
  QNH47_RS07055 (QNH47_07055) - 1490956..1492233 (+) 1278 WP_121615085.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 770 a.a.        Molecular weight: 87024.50 Da        Isoelectric Point: 5.0868

>NTDB_id=834575 QNH47_RS07030 WP_283875610.1 1485004..1487316(-) (recD2) [Virgibacillus halodenitrificans strain ACCC02857]
MDMEKQSIAEQGYVKGELLHTIFHNEAEHFSIAKIKVIETNEDLKEKEIIAKGYFSNLQEQTAYLFYGLFENHPKFGLQY
RVTSYKTYIPDTTEGLIAYLSSDLFYGIGKKTAGKIVQHLGENAVSKILNDRNVLTGVPGLNKDTAESLAQSLQENQGFE
HIVVYLAKYNIGLKMAQKIYQEYKEDAITILEEDPYQYVFDIEGFGFQTADQIAGQRGLSPTHPNRIGAGCIYTLQKSVQ
DGHVFLPLSVCVERVFDLLSAHSLSSDIITERLKELNTTKSVIILEDRVYLPSLYYAEDGFASQLNRIISKSIEDETPLA
ELMKIIGDIEETEILSYGKEQFSAINQAVHSKVLILTGGPGTGKTTVIKGIIKAFSTIHNLSLDPQDYKDKSEFPFILTA
PTGRAAKRLTESTGLPAVTIHRLLGWDGKSGFNKTENEQLSGRFLIIDEFSMVDIWLANHLFKAIPEDMQVLIVGDEDQL
PSVGPGQVLTDLLASDVLPYVKLTDVYRQKEGSKIIQLAHQIKNNALIQLENDKDFSYIPCYENQMIEVVTKIISKAVSK
GIDVKDIQVLAPMYRSLAGITTINRELQQLINPRDKRKREVKIADTIFRKGDKVIQLVNQPEDNVFNGDIGEVVAIFRED
ENTDNVEQLVVLFDEKEVVYERKDYVNIMHAYCISIHKSQGSEFPIVIMPVVSAYRRMLRKNLLYTAITRSKQSLIICGE
QDAFLKGVQTMDTNKRYTTLKEQLLERVQTQKTLLEEPVAEDDISPYDFM

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=834575 QNH47_RS07030 WP_283875610.1 1485004..1487316(-) (recD2) [Virgibacillus halodenitrificans strain ACCC02857]
ATGGATATGGAAAAACAATCGATAGCTGAGCAAGGTTATGTGAAAGGCGAACTTTTGCATACAATTTTTCATAACGAAGC
AGAGCATTTCTCAATTGCTAAAATTAAAGTGATTGAAACAAATGAAGACTTAAAAGAAAAAGAAATAATAGCCAAAGGGT
ATTTTTCAAATCTACAGGAGCAAACAGCTTATCTTTTCTATGGTCTTTTTGAAAATCATCCTAAATTCGGGCTTCAGTAC
CGGGTCACGTCTTATAAAACGTATATTCCGGACACAACAGAAGGTTTAATTGCTTATTTATCGAGTGATCTATTTTACGG
TATCGGAAAGAAAACTGCTGGTAAAATCGTTCAGCATTTAGGAGAGAATGCAGTTTCGAAGATCTTGAATGACCGTAATG
TTTTAACTGGTGTGCCAGGATTAAATAAAGACACTGCAGAATCACTTGCTCAGAGCCTTCAGGAAAATCAAGGCTTTGAG
CATATTGTTGTATATTTGGCAAAATATAATATTGGATTAAAGATGGCACAAAAAATCTATCAAGAATATAAAGAGGATGC
GATAACCATTCTTGAGGAAGATCCTTACCAATATGTTTTCGATATAGAGGGATTTGGATTTCAAACTGCAGATCAAATAG
CAGGTCAAAGAGGACTTTCACCTACTCATCCAAATCGTATCGGTGCTGGTTGTATATATACATTACAAAAAAGTGTGCAG
GATGGTCATGTGTTTTTACCCTTATCTGTCTGTGTTGAGAGAGTTTTTGATCTGTTATCTGCTCATTCCCTTTCTAGCGA
TATTATTACAGAAAGGTTAAAAGAATTAAATACAACTAAATCTGTTATTATTCTAGAGGACCGAGTTTACTTACCTTCTC
TATATTACGCTGAAGATGGGTTTGCTTCCCAGCTGAATCGAATTATAAGTAAATCTATTGAAGATGAAACACCTCTTGCT
GAATTGATGAAAATTATCGGTGATATAGAGGAAACAGAAATTTTAAGCTATGGGAAGGAACAGTTTTCAGCTATAAACCA
GGCTGTTCATTCAAAAGTGTTAATACTTACAGGTGGGCCAGGGACGGGGAAAACAACGGTTATTAAAGGGATAATTAAGG
CTTTTTCCACTATCCATAATCTTTCTCTTGATCCACAGGATTATAAAGATAAGTCTGAATTTCCATTTATACTGACAGCC
CCTACCGGTCGTGCTGCCAAAAGACTTACAGAATCAACCGGCCTACCTGCAGTAACAATACACAGATTACTGGGATGGGA
TGGGAAAAGTGGATTTAATAAGACAGAGAACGAGCAATTAAGTGGCAGATTTTTAATCATTGATGAGTTTTCTATGGTAG
ATATCTGGCTCGCTAATCATTTATTTAAAGCAATTCCTGAAGACATGCAAGTATTAATAGTTGGTGATGAGGATCAATTG
CCTTCTGTAGGTCCTGGTCAAGTGTTAACAGATTTGTTAGCAAGTGACGTGCTACCATATGTGAAATTGACGGATGTATA
TCGACAAAAAGAAGGTTCGAAGATTATTCAGCTTGCACATCAGATTAAGAATAATGCGCTAATTCAACTAGAAAATGATA
AAGACTTTAGTTATATCCCTTGTTACGAAAATCAAATGATTGAAGTCGTTACTAAGATTATTTCCAAGGCTGTCTCCAAA
GGGATTGATGTTAAAGATATTCAAGTCCTTGCGCCAATGTATCGCTCTCTTGCTGGAATTACCACGATTAATAGAGAACT
CCAACAATTAATTAATCCTAGAGACAAGAGAAAAAGAGAAGTAAAGATTGCTGATACTATATTCCGAAAAGGAGATAAGG
TGATCCAGCTTGTAAATCAACCAGAAGACAATGTATTTAACGGAGATATCGGGGAAGTTGTAGCTATTTTTAGAGAAGAT
GAAAATACGGATAATGTGGAGCAACTAGTAGTTCTATTTGATGAAAAAGAAGTAGTTTATGAGCGTAAAGATTATGTTAA
TATTATGCATGCATATTGTATATCGATTCATAAATCTCAAGGAAGTGAATTCCCTATCGTAATTATGCCCGTAGTTTCTG
CATATCGCCGTATGTTAAGAAAGAACTTACTTTACACCGCAATTACCAGAAGTAAACAATCACTTATTATATGTGGTGAA
CAAGACGCATTCCTGAAAGGAGTGCAAACAATGGATACGAATAAACGGTATACAACATTAAAAGAACAATTATTGGAAAG
AGTACAAACTCAAAAAACTCTGTTAGAGGAACCGGTAGCAGAAGATGACATTTCTCCGTATGATTTTATGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(670-718)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(583-653)

AAA domain (AAA_30)

(337-532)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.107

100

0.5