Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   U2S81_RS01645 Genome accession   NZ_CP140366
Coordinates   313424..316246 (-) Length   940 a.a.
NCBI ID   WP_002894536.1    Uniprot ID   -
Organism   Campylobacter jejuni strain PNUSAC038191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 308424..321246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S81_RS01615 (U2S81_01615) - 308803..310164 (+) 1362 WP_002854208.1 MFS transporter -
  U2S81_RS01620 (U2S81_01620) - 310161..311168 (+) 1008 WP_002894534.1 nucleoside hydrolase -
  U2S81_RS01625 (U2S81_01625) - 311124..311567 (-) 444 WP_002858712.1 YqaA family protein -
  U2S81_RS01630 (U2S81_01630) - 311567..312163 (-) 597 WP_002860300.1 hypothetical protein -
  U2S81_RS01635 (U2S81_01635) - 312144..312851 (-) 708 WP_002894535.1 hypothetical protein -
  U2S81_RS01640 (U2S81_01640) - 312871..313422 (-) 552 WP_002867760.1 hypothetical protein -
  U2S81_RS01645 (U2S81_01645) uvrA 313424..316246 (-) 2823 WP_002894536.1 excinuclease ABC subunit UvrA Machinery gene
  U2S81_RS01650 (U2S81_01650) - 316319..317104 (-) 786 WP_002857375.1 sulfite exporter TauE/SafE family protein -
  U2S81_RS01655 (U2S81_01655) - 317226..317315 (+) 90 WP_042635777.1 hypothetical protein -
  U2S81_RS01660 (U2S81_01660) trpE 317516..318766 (+) 1251 WP_002868675.1 anthranilate synthase component I family protein -
  U2S81_RS01665 (U2S81_01665) trpD 318763..320364 (+) 1602 WP_002894537.1 anthranilate phosphoribosyltransferase -
  U2S81_RS01670 (U2S81_01670) trpF 320351..320950 (+) 600 WP_002860294.1 phosphoribosylanthranilate isomerase -

Sequence


Protein


Download         Length: 940 a.a.        Molecular weight: 105387.80 Da        Isoelectric Point: 8.7868

>NTDB_id=834209 U2S81_RS01645 WP_002894536.1 313424..316246(-) (uvrA) [Campylobacter jejuni strain PNUSAC038191]
MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFGTLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGL
TPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIQHCHQCGQKISSMSASDIVSEILKFPKGAKIIIYAPLIREKK
GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRLASDIEKGLQESFGEIEIEVLNH
EEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNSPKGACEACDGLGIRYTLDMKKIIDENLSLENGSVKIMYGFNKSY
YYKFLIAFCEQNEIPIKIPFMQLNEVQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEYMSEKICKD
CGGHRLKPESLAVKVAKKGLGEILDMSIEDSTAFFADEKNFSYLSEQQKLISKPILKEINERLFFLYDVGLGYLSLGRDA
RTISGGEAQRIRIASQIGSGLSGVMYVLDEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKA
GKFGGEVVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPLQNLVAITGVSGSGKSS
LILQTLLPFAQEELNRAKKVKKLGGIQIEGLEKLDKVIYLDQSPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKA
GRFSFNVKGGRCEKCSGDGEIKIEMHFLPDVMVVCDTCGGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKIKQ
KLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLHFEDVNKLILVLQHLVDLKNSVFVI
EHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVEKVAKEHKKTKSYTGYYLDLELKNARS

Nucleotide


Download         Length: 2823 bp        

>NTDB_id=834209 U2S81_RS01645 WP_002894536.1 313424..316246(-) (uvrA) [Campylobacter jejuni strain PNUSAC038191]
ATGAACGATACCATAAAAATCATTGGTGCAAGAGAAAATAACCTAAAAAATATCCACCTTGAAATTCCCAAAAACAAACT
CATTGTTTTTACAGGACTGAGTGGGAGTGGAAAATCAACCCTTGCTTTTGGCACTCTTTATGCCGAGGGACAACGCCGTT
ACATAGAAAGTTTAAGTGCTTATGCCAGACAATTTTTAGATAAGGTGGGCAAACCTGATGTCGATAAAATCGAAGGTTTA
ACTCCAGCCATTGCTATAGATCAAAAAACCACTTCTAAAAATCCACGCTCGACTGTGGGAACCATCACTGAAATTTATGA
TTATCTAAGACTTTTATATGCAAGAGTGGGTATTCAACATTGTCATCAATGCGGACAAAAAATCTCATCTATGAGTGCAA
GTGATATAGTCAGTGAAATTTTAAAATTTCCAAAAGGTGCAAAAATCATCATCTACGCCCCACTCATACGAGAAAAAAAA
GGAACTTATGCAGATTTGCTTGAAAATTTACGCAACAAAGGCTATGTAAGAGCTCAAATTGATGGAGTTTTGGTAAGACT
TGATGAAGAAATTGAACTAGCCAAAACCAAAAAACACACCATTAAACTTGTCATAGATAGACTTGAAATTCAAGAAGATT
TACTTTCTCGTCTTGCAAGCGATATAGAAAAAGGTTTACAGGAAAGCTTTGGAGAAATAGAAATAGAAGTTTTAAATCAT
GAGGAAATAAACCTTAATAAACACTATCATTTTAGCGAGCATTCAGCTTGTTTTGATTGTAAAATTTCCTTTGTTCCACT
CGAGCCTTTAAGCTTTTCTTTTAATTCTCCAAAAGGAGCATGTGAAGCTTGCGATGGACTTGGAATTCGTTATACTTTAG
ATATGAAAAAAATCATCGATGAAAATTTAAGTCTCGAAAACGGTTCTGTTAAAATCATGTATGGTTTTAATAAAAGTTAT
TATTATAAATTCCTAATCGCCTTTTGCGAACAAAATGAAATTCCTATCAAAATACCTTTTATGCAATTAAACGAAGTACA
AAAACGTCTTGTATTGTATGGTAATGCCAAAACTATAGAATTTCTTTGGAAAAGAAATCGCCTAAAACGCACTTTTGAAG
GCGTGGTTAAAATGGCTTATGAAATGCTAAAAGATGAAAAAGATTTAGCCGAATATATGAGTGAAAAAATTTGTAAAGAC
TGCGGTGGGCATCGTTTAAAACCCGAAAGTTTAGCCGTGAAAGTAGCCAAAAAAGGCTTGGGTGAAATTTTAGATATGAG
CATAGAAGATAGCACGGCCTTTTTTGCAGATGAGAAAAATTTTTCTTATTTAAGCGAGCAACAAAAACTTATTTCTAAAC
CTATCCTAAAAGAAATCAACGAAAGATTGTTTTTCTTGTATGATGTGGGGCTAGGTTATCTTTCTTTAGGGCGCGATGCA
AGAACGATTAGTGGGGGTGAAGCACAAAGAATCCGCATAGCTTCACAAATTGGCAGTGGTTTAAGCGGAGTGATGTATGT
CTTAGATGAGCCTAGCATAGGACTTCATGAAAGAGATACTGCAAAACTGATTAAAACTTTAAGAAATTTACAACAAAAGG
GCAATACCCTAATTGTCGTAGAGCATGATAAAATGACCATAGAAGAAGCAGATTTTATTGTAGATATTGGTCCAAAAGCA
GGAAAATTTGGGGGTGAGGTTGTATTTAGTGGAACTTATAAAGAACTTTTAAAAAGCAAAAGCGAAACTGCACTTTATAT
GAATGGTAAAAAACAAATTTCACAACTTCAAAACAGAACACAGAAAGAATGGCTTGAGCTTAAAAATGTAAATATTAACA
ATATCCAAGATTTAAGCGTAAAATTTCCTTTGCAAAATTTAGTCGCTATAACAGGAGTTTCAGGTTCTGGAAAAAGCTCT
TTGATACTTCAAACCCTACTTCCTTTTGCACAAGAGGAATTAAACCGTGCGAAAAAAGTTAAAAAACTTGGCGGAATACA
AATAGAAGGACTTGAAAAACTTGATAAAGTCATTTATCTTGATCAAAGCCCAATTGGGCGCACACCACGTTCAAATCCTG
CCACCTATACAGGTGCTATGGATGAAATCAGAAATCTTTTTGCCGCCACTAAAGAAGCCAAAATGCGTGGTTATAAAGCC
GGACGCTTTTCTTTTAATGTCAAGGGTGGAAGATGTGAGAAATGTAGCGGAGATGGAGAAATCAAAATAGAAATGCATTT
TTTACCTGATGTTATGGTAGTTTGTGATACTTGCGGGGGCAAACGCTACAATGATGCCACGCTAGAAATCAAATATAAAG
GCAAAAATATCAGTGAAATTTTAAATATGAGTGTTTTAGAAGCGAGTGAATTTTTTACAGCCGTTCCTAAAATCAAACAA
AAATTAGATACTCTAGTAAAAGTGGGTTTAGATTATCTAACCCTAGGACAAAATGCCACCACCTTAAGTGGAGGTGAAGC
ACAAAGAATCAAACTTGCTAAAGAACTAAGCCGTAGCGATACAGGAAAAACGCTTTATATACTTGATGAACCTACAACAG
GACTGCATTTTGAAGATGTCAATAAACTCATCTTAGTTTTACAACATTTGGTTGATCTTAAAAATTCTGTTTTTGTGATA
GAACATAATTTAGATGTGATTAAAAATGCTGATTATATCATCGATATGGGGCCTGAAGGCGGAGTTAAAGGTGGAAAAGT
TATAAGCACAGGAAGCGTGGAAAAAGTCGCTAAAGAGCATAAGAAAACAAAATCCTATACAGGATATTATTTAGATCTAG
AGCTTAAAAACGCAAGGAGTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

51.84

100

0.524

  uvrA Streptococcus pneumoniae TIGR4

51.84

100

0.524

  uvrA Streptococcus pneumoniae D39

51.84

100

0.524