Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   SR852_RS16310 Genome accession   NZ_CP140161
Coordinates   3170719..3171168 (-) Length   149 a.a.
NCBI ID   WP_003181503.1    Uniprot ID   Q65K02
Organism   Bacillus licheniformis strain ATCC 14580     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3165719..3176168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS16280 (SR852_16280) - 3166454..3167476 (-) 1023 WP_009328558.1 SepM family pheromone-processing serine protease -
  SR852_RS16285 (SR852_16285) ylbJ 3167800..3169020 (+) 1221 WP_003181511.1 sporulation integral membrane protein YlbJ -
  SR852_RS16290 (SR852_16290) coaD 3169029..3169523 (-) 495 WP_003181508.1 pantetheine-phosphate adenylyltransferase -
  SR852_RS16295 (SR852_16295) rsmD 3169516..3170082 (-) 567 WP_003181507.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SR852_RS16300 (SR852_16300) - 3170131..3170265 (-) 135 WP_254926361.1 hypothetical protein -
  SR852_RS16305 (SR852_16305) - 3170375..3170647 (-) 273 WP_009328559.1 YlbG family protein -
  SR852_RS16310 (SR852_16310) ylbF 3170719..3171168 (-) 450 WP_003181503.1 YlbF family regulator Regulator
  SR852_RS16315 (SR852_16315) - 3171446..3171685 (-) 240 WP_003181501.1 YlbE-like family protein -
  SR852_RS16320 (SR852_16320) - 3171700..3172095 (-) 396 WP_003181499.1 YlbD family protein -
  SR852_RS16325 (SR852_16325) - 3172249..3173292 (-) 1044 WP_003181497.1 CAP domain-containing protein -
  SR852_RS16330 (SR852_16330) - 3173433..3173879 (-) 447 WP_003181494.1 CBS domain-containing protein -
  SR852_RS16335 (SR852_16335) - 3174047..3174406 (+) 360 WP_003181492.1 YugN family protein -
  SR852_RS16340 (SR852_16340) ctaG 3174463..3175362 (-) 900 WP_011197954.1 cytochrome c oxidase assembly factor CtaG -
  SR852_RS16345 (SR852_16345) ctaF 3175396..3175725 (-) 330 WP_003181487.1 cytochrome c oxidase subunit IVB -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16903.11 Da        Isoelectric Point: 6.3347

>NTDB_id=833931 SR852_RS16310 WP_003181503.1 3170719..3171168(-) (ylbF) [Bacillus licheniformis strain ATCC 14580]
MFATMESLRLQNEAYDLANMILQSEAAEHYRKCYKRLREDEEAGRIIASFTKIKEQYEDVQRFGKYHPDYKEISKKMREI
KRELDLHDTVAEFKKAETELQSILDEVSVEIGHAVSKHIKVPTGNPYFDNLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=833931 SR852_RS16310 WP_003181503.1 3170719..3171168(-) (ylbF) [Bacillus licheniformis strain ATCC 14580]
ATGTTTGCCACAATGGAATCGTTGCGGCTTCAAAATGAAGCATATGATTTGGCCAACATGATTCTTCAATCAGAGGCGGC
TGAACATTACAGAAAATGCTACAAGCGTCTCCGCGAAGATGAAGAGGCCGGACGTATTATCGCTTCGTTTACGAAAATAA
AAGAACAGTACGAGGATGTGCAGCGCTTTGGCAAGTATCATCCTGATTATAAAGAGATATCCAAGAAAATGAGGGAAATC
AAACGGGAGCTTGACCTTCACGATACAGTAGCCGAATTTAAAAAGGCGGAAACCGAGCTGCAATCCATTCTTGATGAAGT
CAGCGTGGAAATCGGTCATGCTGTGTCAAAACATATCAAAGTACCGACTGGAAACCCTTATTTTGATAATCTTTCATCTT
GCGGCGGCGGCTGCGGGTCAGGCGGAAGCTGCGGCTGTAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65K02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

84.564

100

0.846