Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   U1R71_RS08345 Genome accession   NZ_CP140123
Coordinates   1577032..1577481 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SJTU2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1572032..1582481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS08305 (U1R71_08305) ctaE 1572048..1572671 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  U1R71_RS08310 (U1R71_08310) ctaF 1572674..1573006 (+) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  U1R71_RS08315 (U1R71_08315) ctaG 1573034..1573927 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  U1R71_RS08320 (U1R71_08320) ylbA 1573959..1574321 (-) 363 WP_014479712.1 YugN family protein -
  U1R71_RS08325 (U1R71_08325) ylbB 1574461..1574907 (+) 447 WP_003221362.1 CBS domain-containing protein -
  U1R71_RS08330 (U1R71_08330) ylbC 1574991..1576031 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  U1R71_RS08335 (U1R71_08335) ylbD 1576263..1576661 (+) 399 WP_003232233.1 YlbD family protein -
  U1R71_RS08340 (U1R71_08340) ylbE 1576677..1576916 (+) 240 WP_003232231.1 YlbE-like family protein -
  U1R71_RS08345 (U1R71_08345) ylbF 1577032..1577481 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  U1R71_RS08350 (U1R71_08350) ylbG 1577536..1577808 (+) 273 WP_009967171.1 YlbG family protein -
  U1R71_RS08355 (U1R71_08355) rsmD 1578131..1578685 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  U1R71_RS08360 (U1R71_08360) coaD 1578690..1579175 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  U1R71_RS08365 (U1R71_08365) spoVV 1579186..1580412 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  U1R71_RS08370 (U1R71_08370) ylbK 1580593..1581375 (+) 783 WP_003232221.1 patatin family protein -
  U1R71_RS08375 (U1R71_08375) sepM 1581377..1582402 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=833736 U1R71_RS08345 WP_003221370.1 1577032..1577481(+) (ylbF) [Bacillus subtilis strain SJTU2]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=833736 U1R71_RS08345 WP_003221370.1 1577032..1577481(+) (ylbF) [Bacillus subtilis strain SJTU2]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1