Detailed information NTG0083371

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: VNTUMSATTG_RS03250
• Genome accession: NZ_AP024087
• Coordinates: 678749..682135 (-)
• Length: 1128 a.a.
• NCBI ID: WP_200766702.1
• Uniprot ID: -
• Organism: Vibrio nigripulchritudo strain TUMSAT-TG-2018
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 673749..687135

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNTUMSATTG_RS03235 (VNTUMSATTG_06010)	-	674155..675180 (-)	1026	WP_004401926.1	ABC transporter permease	-
VNTUMSATTG_RS03240 (VNTUMSATTG_06020)	-	675183..676169 (-)	987	WP_004401928.1	ABC transporter permease	-
VNTUMSATTG_RS03245 (VNTUMSATTG_06030)	-	676325..678004 (-)	1680	WP_004401929.1	ABC transporter substrate-binding protein	-
VNTUMSATTG_RS03250 (VNTUMSATTG_06040)	chiS	678749..682135 (-)	3387	WP_200766702.1	ATP-binding protein	Regulator
VNTUMSATTG_RS03255 (VNTUMSATTG_06050)	rsmC	682376..683404 (-)	1029	WP_200766703.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
VNTUMSATTG_RS03260 (VNTUMSATTG_06060)	-	683484..684602 (-)	1119	WP_404819587.1	AI-2E family transporter	-
VNTUMSATTG_RS03265 (VNTUMSATTG_06070)	hemL	684808..686097 (-)	1290	WP_200766704.1	glutamate-1-semialdehyde 2,1-aminomutase	-
VNTUMSATTG_RS03270 (VNTUMSATTG_06080)	erpA	686297..686638 (+)	342	WP_004401935.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 126953.49 Da
• Isoelectric Point: 5.5694

>NTDB_id=83371 VNTUMSATTG_RS03250 WP_200766702.1 678749..682135(-) (chiS) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MFKSNKKQKFKRLQHTLMVAFLVLSITPLTLIALFFLQSHSKDLQEQSTSHLLSVRDTKKQQLVDYFDAKESEVMGFVRS
ELAYNSGGRFYGLINAFSNLGETIEQSREYAQQRYIEGSGDQIKTSILPESDDYQGSERYRLMHKRYHRRYVDLLKRSDF
DDILLVDLDGNVVYSLNKHDNYGTNLGSGKYRDSNLGETFQAIKSLVKKQKDTPDITPIVMSDFALEGSEHIAWFAAPII
QQEYLHSYALFRLPSTKLISLFEDTAARKAIKAFLVGSDKQARVFNVTQEEIDKSSEIIDRALNGQTSVRTFINTAGESI
IAAYTSIKIQNIEWALIAERTEAEAFARIQQLEKVFVVAMLIAIILVVICSHYLSNFITSPLLKLTWSAERVSAGDLDEV
MFETRRKDEIGRLAVSFQRMQRSIREKILTIKSQNEELEAHLKVIQSQNDELQLANKLKDEFLATTSHELRTPLHGMVGI
AEALISGANGPIPANQKHQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIQAAAVNLSSSTRLVLELSQHLLGNKSIRII
NQVPMDLPLVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATVLDDKLRVQVVDTGQGIPAEQLEHIFEPLIQAGQDSSR
YRQGAGLGLSISRQLIELMGGTLYVSSQPLVGTTFSFSLPLASDAEISTSKQLGEQNHFQLPEANENSSPEDNSLPENPE
GPLIVVADDEPVNLQILDSFLRMEGYRVKTAKDGTETLELVQQEKPELLLLDVMMPGLSGYQVCEQVRLSYDLSELPVIM
LTALSQTNDRIKGFDSGANDYLTKPFNKLELASRIKAHLSASKAELRRIENDKLQAELKQRALVEANLLETQGRLLEQLE
SAPEAILCLRDDGRIRFANEAASKLFKRTQEQLKRSNGDEVIAPKYLNLSQEHFCGGIDVYIDDRREHLSADVLKLPEGS
DIQYMYIFNIGGGINATRINNLETAVEALSSYAFEGDKGKLQQLKELGGEFTRIADKVSGRGGDKTELMREILVDSMTTA
IDYWESETGQTKFSFAEQSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLNSIEFILDNCHTPGAQRDKLVSLRD
KLQKLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=83371 VNTUMSATTG_RS03250 WP_200766702.1 678749..682135(-) (chiS) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGTTTAAATCTAATAAAAAACAAAAATTTAAACGTCTTCAGCATACTTTGATGGTGGCATTTCTTGTCCTCAGTATTAC
GCCGCTGACTTTAATTGCTCTCTTCTTTTTGCAGTCTCACAGTAAAGATTTGCAAGAGCAGAGTACTTCTCACCTTCTTT
CAGTTCGAGATACGAAAAAACAACAACTTGTCGATTATTTCGATGCAAAAGAATCCGAAGTAATGGGTTTTGTCCGTTCC
GAACTGGCTTATAACAGTGGTGGTCGTTTTTACGGCCTTATCAATGCTTTCAGCAACTTAGGCGAAACGATTGAGCAATC
GCGGGAGTATGCGCAGCAGCGTTACATTGAAGGATCTGGGGATCAGATAAAAACGTCAATTTTGCCTGAGTCTGATGATT
ACCAGGGCAGCGAACGTTATCGCTTAATGCACAAGCGTTACCATCGACGTTACGTTGATCTTTTAAAACGCAGTGATTTT
GACGACATCTTGTTGGTCGATCTGGATGGAAACGTCGTCTACTCACTCAACAAGCACGACAATTATGGTACGAATCTGGG
TTCCGGAAAGTATCGGGACAGCAACCTCGGTGAAACTTTTCAGGCAATAAAATCTCTGGTGAAAAAGCAGAAAGACACAC
CAGACATTACGCCAATTGTGATGTCGGATTTTGCACTAGAGGGAAGTGAGCACATCGCGTGGTTTGCCGCGCCTATCATC
CAGCAAGAATACCTGCACAGTTATGCCCTATTCCGTTTGCCTAGCACCAAGCTGATTTCTCTGTTTGAAGATACTGCTGC
GCGTAAAGCCATCAAGGCATTCTTGGTTGGTAGTGACAAACAGGCTCGTGTTTTTAACGTCACTCAGGAAGAAATTGACA
AAAGTAGCGAGATCATCGACCGCGCCCTTAACGGGCAAACCTCAGTCAGAACCTTTATCAATACCGCAGGCGAAAGTATT
ATTGCGGCTTACACCAGTATTAAGATCCAAAATATTGAATGGGCGTTAATTGCGGAACGAACCGAAGCTGAAGCGTTTGC
TCGGATTCAGCAGCTAGAAAAAGTATTCGTGGTGGCCATGTTGATCGCCATTATACTTGTGGTGATCTGCTCCCATTATC
TTTCTAACTTCATTACGTCCCCGCTTTTAAAACTGACGTGGTCAGCGGAAAGGGTTTCAGCTGGTGATCTCGACGAAGTG
ATGTTTGAAACACGCCGCAAAGATGAAATTGGTCGTCTGGCGGTCAGTTTCCAGCGAATGCAGCGCTCTATCCGTGAGAA
GATCCTCACCATCAAATCGCAAAATGAAGAGCTAGAAGCCCATCTGAAAGTGATTCAAAGCCAGAATGACGAGCTTCAAC
TGGCCAACAAACTGAAAGATGAATTCCTTGCAACCACCTCCCACGAGCTCCGTACACCACTGCATGGCATGGTGGGCATT
GCAGAGGCGTTAATCAGCGGAGCAAACGGACCAATACCTGCAAACCAGAAACATCAGCTCGATATCATCATTAATAGCGG
TCAACGTCTTGCAACTCTGGTTGATGATCTTCTGGACTATCACAAAATGCGCTACGGCAGCCTCGATATTCAGGCTGCCG
CTGTTAACCTCTCGTCCTCTACACGCTTGGTACTGGAACTGTCACAGCATTTACTGGGCAACAAATCGATTCGCATCATT
AATCAGGTTCCGATGGATTTGCCTTTAGTATCCGCTGATCCGCAGCGTTTAGAACAGGTTCTCTACAACCTGATAGGCAA
TGCTATTAAGTACACCTCTGAAGGTAAAATCGTCATTTCAGCTACAGTGCTGGACGATAAACTCCGGGTTCAGGTGGTTG
ATACAGGTCAGGGGATTCCGGCAGAGCAGCTGGAGCATATTTTTGAGCCTCTCATTCAGGCGGGTCAGGACTCCAGCCGT
TACCGTCAGGGGGCGGGATTAGGCTTATCTATCAGTCGACAGTTGATCGAACTGATGGGAGGAACGCTCTATGTCAGCAG
TCAACCTCTTGTTGGCACTACCTTTAGTTTCTCTTTACCGTTAGCGTCAGATGCAGAGATATCAACGTCGAAGCAGCTTG
GCGAACAGAATCATTTCCAGTTGCCAGAAGCAAATGAAAACTCGTCACCAGAAGACAATTCATTGCCAGAAAACCCAGAA
GGTCCACTCATTGTGGTCGCGGATGATGAACCGGTGAACCTGCAAATTCTGGACAGCTTCCTGCGAATGGAAGGATACAG
GGTGAAAACGGCAAAAGATGGCACCGAGACCCTGGAACTGGTTCAGCAGGAAAAGCCTGAACTTCTACTATTAGACGTGA
TGATGCCAGGATTAAGTGGCTATCAGGTTTGTGAGCAGGTGCGTCTGAGTTATGACTTATCTGAGCTTCCGGTCATTATG
CTTACCGCGCTAAGCCAGACCAACGATCGAATCAAAGGGTTCGACAGCGGGGCAAATGACTATTTAACTAAGCCATTCAA
CAAGCTCGAGCTGGCTTCTCGAATCAAAGCTCATCTCTCAGCAAGTAAGGCGGAACTTCGCCGAATTGAAAACGACAAGC
TTCAGGCAGAGCTTAAGCAAAGAGCACTAGTAGAAGCAAACCTACTGGAAACACAAGGCAGATTGCTAGAACAGCTTGAA
TCGGCACCTGAAGCCATTCTGTGCCTTAGGGACGATGGCAGAATACGGTTTGCAAACGAGGCAGCGTCTAAGCTATTTAA
ACGAACTCAGGAGCAGCTCAAACGTTCAAACGGTGACGAAGTCATTGCCCCGAAATACCTCAACCTATCTCAGGAACACT
TCTGCGGCGGAATTGACGTCTACATTGACGACAGGCGTGAACACCTTTCAGCGGATGTATTGAAGCTGCCAGAAGGCTCT
GACATCCAGTATATGTACATATTCAATATAGGCGGAGGCATTAACGCAACCCGCATTAATAATCTGGAAACCGCAGTTGA
AGCCCTGTCCAGCTATGCGTTTGAAGGAGACAAAGGCAAACTGCAACAGCTTAAAGAGCTGGGCGGCGAGTTTACGCGAA
TCGCAGATAAAGTGTCTGGTCGTGGTGGAGACAAGACAGAGCTCATGAGAGAGATTCTGGTTGATTCAATGACAACAGCG
ATTGACTACTGGGAATCGGAAACAGGGCAAACCAAATTCTCCTTCGCAGAACAGAGTGGCTTATGGCGCGTCTACCTTGA
TCGCAGCACGCTGCAAACTAGAACACTGGATAAATACCTTCGTGTTGAAACTCTGCCAAAAACTCCACGCTGGCGGACGG
TATTGAACTCTATCGAGTTTATTCTGGATAACTGCCATACGCCTGGCGCACAGCGTGACAAACTGGTTAGCCTGCGGGAT
AAATTGCAAAAACTCCTTACCTCATAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (724-835)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

• HAMP domain (HAMP) (374-426)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-682)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	71.568	100	0.716