Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VNTUMSATTG_RS00805 Genome accession   NZ_AP024087
Coordinates   169460..170170 (-) Length   236 a.a.
NCBI ID   WP_200766493.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-TG-2018     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 164460..175170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNTUMSATTG_RS00780 (VNTUMSATTG_01450) - 164769..165527 (+) 759 WP_004404510.1 type II secretion system protein N -
  VNTUMSATTG_RS00785 (VNTUMSATTG_01460) nudE 165687..166241 (+) 555 WP_200766491.1 ADP compounds hydrolase NudE -
  VNTUMSATTG_RS00790 (VNTUMSATTG_01470) cysQ 166253..167071 (+) 819 WP_022551827.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VNTUMSATTG_RS00795 (VNTUMSATTG_01480) - 167372..168691 (+) 1320 WP_200766492.1 trypsin-like serine protease -
  VNTUMSATTG_RS00800 (VNTUMSATTG_01490) nfuA 168782..169369 (-) 588 WP_004404517.1 Fe-S biogenesis protein NfuA -
  VNTUMSATTG_RS00805 (VNTUMSATTG_01500) comF 169460..170170 (-) 711 WP_200766493.1 ComF family protein Machinery gene
  VNTUMSATTG_RS00810 (VNTUMSATTG_01510) bioH 170247..171011 (+) 765 WP_200766494.1 pimeloyl-ACP methyl ester esterase BioH -
  VNTUMSATTG_RS00815 (VNTUMSATTG_01520) - 171152..171616 (+) 465 WP_200766495.1 ATP-dependent Lon protease -
  VNTUMSATTG_RS00820 (VNTUMSATTG_01530) plsB 171674..174097 (-) 2424 WP_200766496.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  VNTUMSATTG_RS00825 (VNTUMSATTG_01540) lexA 174427..175044 (+) 618 WP_004404532.1 transcriptional repressor LexA -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27338.86 Da        Isoelectric Point: 8.5432

>NTDB_id=83368 VNTUMSATTG_RS00805 WP_200766493.1 169460..170170(-) (comF) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MVISSWLKLKLHRYFNLQCPLCGLNIEEPTPETRWCRHCLNSMSDPCRCQCCGLPTLEPVEFCGECLSNPPPWRRLYCVN
DYRPPLSHYIHSLKFQHQFRLARDLSYLLAQKIAEPADVITSVPLHWRRELIRGYNQSDHLARALCQHLNMPERFNPNLF
KRVKYTAPQLGQDKKARHRNLYGAFRLIAPPAAKHVAIVDDVVTTGSTIRQMCNLLLDVGVETIDIYCICRTPEPK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=83368 VNTUMSATTG_RS00805 WP_200766493.1 169460..170170(-) (comF) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGGTGATTTCCAGCTGGCTAAAGCTCAAATTACACCGTTATTTTAATCTGCAATGCCCGCTATGTGGTCTGAACATTGA
AGAACCTACACCAGAAACACGATGGTGCAGACATTGCCTGAACAGCATGAGCGATCCTTGCCGTTGCCAATGCTGCGGGC
TACCGACTTTGGAACCTGTTGAATTCTGTGGTGAGTGCTTAAGCAACCCGCCTCCCTGGCGCCGTCTGTATTGTGTAAAC
GACTATCGTCCACCGCTTTCGCATTATATCCACAGCCTGAAATTTCAGCATCAGTTTCGTCTAGCCCGTGACCTCAGCTA
CTTACTTGCGCAGAAAATTGCAGAGCCTGCCGACGTGATTACTTCTGTCCCACTTCACTGGCGCAGAGAACTGATACGCG
GCTACAACCAGAGTGACCATCTGGCAAGAGCATTGTGTCAGCATCTCAATATGCCCGAACGATTTAATCCGAATCTGTTC
AAGCGGGTGAAATATACTGCACCTCAACTCGGTCAGGATAAAAAGGCCAGACATAGAAACCTTTATGGTGCTTTTCGGTT
AATTGCGCCTCCAGCTGCAAAGCACGTAGCAATCGTCGACGATGTGGTGACAACGGGCAGCACTATCCGACAAATGTGTA
ATTTACTGCTTGATGTTGGCGTAGAAACCATCGATATTTACTGCATATGCCGAACCCCTGAGCCGAAATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(180-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.766

99.576

0.525
  comF Vibrio campbellii strain DS40M4

48.548

100

0.496

Multiple sequence alignment