Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QM338_RS07655 Genome accession   NZ_CP125901
Coordinates   1580186..1580632 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CHAL2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1575186..1585632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM338_RS07625 (QM338_07625) gcvPA 1576112..1577458 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QM338_RS07630 (QM338_07630) gcvT 1577478..1578569 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QM338_RS07635 (QM338_07635) - 1578728..1579252 (-) 525 WP_001015120.1 shikimate kinase -
  QM338_RS07640 (QM338_07640) - 1579242..1579388 (-) 147 WP_001792109.1 hypothetical protein -
  QM338_RS07645 (QM338_07645) comGF 1579485..1579982 (-) 498 WP_029650985.1 competence type IV pilus minor pilin ComGF Machinery gene
  QM338_RS07650 (QM338_07650) comGE 1579900..1580199 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  QM338_RS07655 (QM338_07655) comGD 1580186..1580632 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QM338_RS07660 (QM338_07660) comGC 1580610..1580921 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QM338_RS07665 (QM338_07665) comGB 1580935..1582005 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QM338_RS07670 (QM338_07670) comGA 1581977..1582951 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QM338_RS07675 (QM338_07675) - 1583003..1583626 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QM338_RS07680 (QM338_07680) - 1583623..1583952 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QM338_RS07685 (QM338_07685) - 1583952..1584938 (-) 987 WP_000161311.1 ROK family glucokinase -
  QM338_RS07690 (QM338_07690) - 1584935..1585138 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=833557 QM338_RS07655 WP_001788899.1 1580186..1580632(-) (comGD) [Staphylococcus aureus strain CHAL2]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=833557 QM338_RS07655 WP_001788899.1 1580186..1580632(-) (comGD) [Staphylococcus aureus strain CHAL2]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1