Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QMY49_RS13900 Genome accession   NZ_CP125875
Coordinates   2934974..2935699 (+) Length   241 a.a.
NCBI ID   WP_029788954.1    Uniprot ID   A0A9X3MHW5
Organism   Vibrio harveyi strain SB1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2929974..2940699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY49_RS13885 (QMY49_13885) - 2931098..2933419 (+) 2322 WP_199449576.1 Tex family protein -
  QMY49_RS13890 (QMY49_13890) - 2933524..2933988 (-) 465 WP_009698973.1 hypothetical protein -
  QMY49_RS13895 (QMY49_13895) bioH 2934125..2934889 (-) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  QMY49_RS13900 (QMY49_13900) comF 2934974..2935699 (+) 726 WP_029788954.1 ComF family protein Machinery gene
  QMY49_RS13905 (QMY49_13905) nfuA 2935797..2936381 (+) 585 WP_017189962.1 Fe-S biogenesis protein NfuA -
  QMY49_RS13910 (QMY49_13910) nudE 2936557..2937123 (+) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  QMY49_RS13915 (QMY49_13915) cysQ 2937171..2937998 (+) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QMY49_RS13920 (QMY49_13920) - 2938288..2939049 (-) 762 WP_005448490.1 type II secretion system protein N -
  QMY49_RS13925 (QMY49_13925) - 2939051..2939542 (-) 492 WP_005448492.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27667.71 Da        Isoelectric Point: 8.4332

>NTDB_id=833246 QMY49_RS13900 WP_029788954.1 2934974..2935699(+) (comF) [Vibrio harveyi strain SB1]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=833246 QMY49_RS13900 WP_029788954.1 2934974..2935699(+) (comF) [Vibrio harveyi strain SB1]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGTGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCATGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

92.116

100

0.921
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469