Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   U0N78_RS10960 Genome accession   NZ_CP140109
Coordinates   2284735..2287068 (-) Length   777 a.a.
NCBI ID   WP_043027046.1    Uniprot ID   -
Organism   Streptococcus suis strain 2022WUSS148     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2279735..2292068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0N78_RS10940 (U0N78_10940) msrB 2280574..2281512 (-) 939 WP_043027042.1 peptide-methionine (R)-S-oxide reductase MsrB -
  U0N78_RS10945 (U0N78_10945) - 2281552..2283081 (-) 1530 WP_043027043.1 AMP-binding protein -
  U0N78_RS10950 (U0N78_10950) trxA 2283220..2283534 (-) 315 WP_043027044.1 thioredoxin -
  U0N78_RS10955 (U0N78_10955) - 2284058..2284711 (-) 654 WP_043027045.1 GNAT family N-acetyltransferase -
  U0N78_RS10960 (U0N78_10960) mutS/mutS2 2284735..2287068 (-) 2334 WP_043027046.1 endonuclease MutS2 Machinery gene
  U0N78_RS10965 (U0N78_10965) - 2287224..2287772 (-) 549 WP_029175774.1 CvpA family protein -
  U0N78_RS10970 (U0N78_10970) - 2287769..2288080 (-) 312 WP_024406827.1 hypothetical protein -
  U0N78_RS10975 (U0N78_10975) treR 2288138..2288851 (-) 714 WP_024380213.1 trehalose operon repressor Regulator
  U0N78_RS10980 (U0N78_10980) treP 2289087..2291081 (+) 1995 WP_105130416.1 PTS system trehalose-specific EIIBC component -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87586.25 Da        Isoelectric Point: 6.4374

>NTDB_id=833183 U0N78_RS10960 WP_043027046.1 2284735..2287068(-) (mutS/mutS2) [Streptococcus suis strain 2022WUSS148]
MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVHRIQQAFDELTDIAQIFVENPYFSMSATSDIGPAMRRLEL
DTDLNIAELLAVKKVLEVSKSLLDFYGNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTVYIEPRAVVTLNEEISHLRAEER
HELNRILQELSDMLRPHSGIIRNNAWVIGHLDFIRAKHLFARDYKAVVPTISEKQDIALLNVRHPLIADPVPNDLYFGSQ
LTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVQILAEAD
QDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYGIETSGIENASMEFDTNSLRPTYKFMQGVPG
RSNAFEIARRLGLSDIIIQSAQSWTDTDSDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENE
LNKARLEAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAKIQREAKVGDDIIVTAY
GQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQPKKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFI
DQALLNNLAQVDIVHGIGTGVIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=833183 U0N78_RS10960 WP_043027046.1 2284735..2287068(-) (mutS/mutS2) [Streptococcus suis strain 2022WUSS148]
ATGAATAATAAAATTATTGAAACCCTTGAATTTCACAAGGTAAGACAAAAAATTGAGCCCTATCTCTTGACGGAACAGGG
CTTTGAAGAATTGCGACAGTTGGAGCCTATGGTGGAAGTCCACCGTATCCAACAGGCCTTTGACGAGTTGACAGATATAG
CGCAGATTTTTGTGGAAAATCCCTATTTCAGCATGTCTGCTACGAGTGACATTGGTCCAGCCATGCGTCGTTTGGAATTG
GATACAGACCTCAATATCGCTGAATTATTAGCTGTTAAAAAGGTCTTGGAAGTTTCTAAATCTCTCTTGGATTTTTATGG
AAATCTGGAAAATGTCAGTCTTAGCCAGCTGGATAAACTCTTTGAGAAGATTGAGCTTTTTCCACATTTACAGGGCTCCC
TCCAGTCTATCAATGATGCTGGTTTTGTAGAGGATTTTGCCTCAGAAAAGCTGGCTCGTATCCGCCGGAAAATCCGTGAA
GCTGAAGACCAAGTTCGTCAGGTCATGCAGGATATTTTGAAGACCAAGGGGGACATGCTGTCCGATAGCATTTTGGCAAG
CCGTAATGGACGCAATGTCCTTCCTGTTAAAAATACCTATCGCAATAAGATTGCTGGGGTTGTCCATGACATTTCAGCTT
CGGGTTCGACCGTTTATATTGAGCCGCGGGCAGTGGTGACCTTGAACGAAGAAATCAGTCACCTACGTGCAGAAGAACGC
CATGAGCTCAACCGAATTTTGCAGGAACTGTCGGATATGTTGCGACCACATAGCGGCATCATTCGCAATAATGCTTGGGT
CATTGGGCATTTGGATTTCATCCGCGCCAAACACCTCTTTGCACGAGACTACAAGGCCGTAGTTCCGACTATTTCGGAGA
AGCAGGATATTGCCCTTCTCAACGTTCGGCATCCGCTCATTGCTGATCCTGTGCCAAATGACCTTTATTTCGGTAGTCAG
TTGACGGCTATCGTGATAACAGGTCCCAACACAGGTGGTAAGACCATCATGCTCAAGACCTTGGGATTGACCCATCTGAT
GGCTCAGTCTGGTTTGCCTATTTTGGCTGACAAGGGCAGTCGGGTAGCTATCTTCAAAGAAATTTTTGCGGATATTGGGG
ACGAACAGTCGATTGAGCAGAGTTTATCAACCTTTTCCAGTCACATGACCCACACGGTGCAGATTTTAGCGGAGGCAGAT
CAAGATTCCCTCATTCTCTTTGACGAGTTGGGAGCTGGGACAGATCCGCAGGAGGGTGCGTCCTTGGCAATGGCTATTTT
GGATGACCTTCGTCTGCGGGGGATCAAGACCATGGCAACTACCCACTATCCGGAGCTCAAGGCCTACGGGATAGAAACCT
CTGGTATTGAAAATGCCAGCATGGAGTTTGATACCAATAGTCTACGACCAACTTATAAATTTATGCAGGGTGTTCCTGGT
CGCTCCAATGCCTTTGAAATTGCCCGCCGTCTTGGTCTATCTGATATTATTATCCAGTCAGCCCAATCTTGGACGGATAC
AGATAGCGATGTGAACCGCATTATCGAGAAATTGGAAAGTCAGACGGTTGAAAGTCGTCAACGTCTGGATAAGATTCGTG
ATGTGGAGCAAGAAAATTACAAGATGAACCGAGCCCTCCGCAAGCTCTATGACGAGCTCAATCGTGAGCGGGAAAATGAG
CTCAACAAGGCACGCTTGGAAGCCAAGGAAATTGTAGATATGGCATTGGCAGAAAGCGAGGATATTCTCAAAAATCTCCA
TGCTGCAGCCAGTCTTAAGCCCCACCAGATTATTGAAGCCAAGGCAGAGCTGAAAAAGTTGGCGCCTGAAGTGGTGGATC
TGTCTAAAAACAAGGTTCTGAAGAAAGCTAAAATTCAGAGGGAAGCCAAGGTGGGCGATGACATTATCGTTACAGCTTAT
GGACAACGCGGGACCTTGACCAATCAGCTCAAGGACGGGCGTTGGGAAGCTCAGGTTGGCTTGATTAAGATGACCTTGGC
CAAAGATGAGTTTGAGTTAGTCAAGGCGGAAAAGGCAGAGCAGCCTAAGAAACGCCAGGTTCACACGGTCAAACGTGCCA
ATGTACGAGGACCAAAAGCTCGCTTAGATCTCCGTGGCAAACGCTACGAAGAGGCTATGATGGAGCTGGATGAATTTATC
GACCAAGCCCTGCTCAATAACCTAGCCCAAGTCGATATTGTCCATGGTATAGGTACAGGGGTTATCCGAGAAGGGGTGAC
CAAGTACCTACGCCGAAACAAGCAGGTCAAGGAGTTCGGCTATGCCCCACAAAATGCAGGTGGATCAGGCTGTACTATTG
TGACGTTTAAATAG

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(324-504)

Smr domain (Smr)

(702-777)

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

40.025

100

0.408