Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R8624_RS07945 Genome accession   NZ_AP026930
Coordinates   1569063..1570334 (+) Length   423 a.a.
NCBI ID   WP_023396414.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1564063..1575334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8624_RS07905 (PC1195_15630) prmA 1564142..1565092 (-) 951 WP_050273731.1 50S ribosomal protein L11 methyltransferase -
  R8624_RS07910 (PC1195_15640) - 1565230..1565658 (-) 429 WP_000401987.1 NUDIX hydrolase -
  R8624_RS07915 (PC1195_15650) - 1565660..1566727 (-) 1068 WP_000719703.1 site-2 protease family protein -
  R8624_RS07920 (PC1195_15660) - 1566746..1567216 (-) 471 WP_000257100.1 DUF3013 family protein -
  R8624_RS07925 (PC1195_15670) - 1567507..1567959 (-) 453 WP_317650092.1 type II toxin-antitoxin system HicB family antitoxin -
  R8624_RS07930 (PC1195_15680) - 1567996..1568175 (-) 180 WP_001132282.1 type II toxin-antitoxin system HicA family toxin -
  R8624_RS07935 (PC1195_15690) - 1568312..1568560 (-) 249 WP_000797240.1 hypothetical protein -
  R8624_RS07940 (PC1195_15700) - 1568550..1568771 (-) 222 WP_000425689.1 hypothetical protein -
  R8624_RS07945 (PC1195_15710) rarA 1569063..1570334 (+) 1272 WP_023396414.1 replication-associated recombination protein A Machinery gene
  R8624_RS07955 (PC1195_15720) - 1570754..1571881 (-) 1128 WP_050203638.1 tyrosine-type recombinase/integrase -
  R8624_RS07960 (PC1195_15730) - 1571883..1572065 (-) 183 WP_000655516.1 DUF3173 domain-containing protein -
  R8624_RS07965 (PC1195_15740) - 1572081..1573124 (-) 1044 WP_001031659.1 hypothetical protein -
  R8624_RS07970 (PC1195_15750) - 1573249..1573512 (-) 264 WP_069115569.1 hypothetical protein -
  R8624_RS07975 (PC1195_15760) - 1573690..1575009 (-) 1320 WP_317650097.1 FtsK/SpoIIIE domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46980.41 Da        Isoelectric Point: 5.9140

>NTDB_id=83309 R8624_RS07945 WP_023396414.1 1569063..1570334(+) (rarA) [Streptococcus pneumoniae strain PZ900701208]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
ITLSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=83309 R8624_RS07945 WP_023396414.1 1569063..1570334(+) (rarA) [Streptococcus pneumoniae strain PZ900701208]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAACTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTTCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTAAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.946

96.69

0.56

Multiple sequence alignment