Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QMY43_RS13500 Genome accession   NZ_CP125856
Coordinates   2870779..2871504 (+) Length   241 a.a.
NCBI ID   WP_069485175.1    Uniprot ID   A0AAW8Q361
Organism   Vibrio parahaemolyticus strain G855     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2865779..2876504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY43_RS13485 (QMY43_13485) - 2866882..2869203 (+) 2322 WP_159404211.1 Tex family protein -
  QMY43_RS13490 (QMY43_13490) - 2869339..2869803 (-) 465 WP_005459035.1 hypothetical protein -
  QMY43_RS13495 (QMY43_13495) bioH 2869927..2870694 (-) 768 WP_193237427.1 pimeloyl-ACP methyl ester esterase BioH -
  QMY43_RS13500 (QMY43_13500) comF 2870779..2871504 (+) 726 WP_069485175.1 phosphoribosyltransferase family protein Machinery gene
  QMY43_RS13505 (QMY43_13505) nfuA 2871602..2872186 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  QMY43_RS13510 (QMY43_13510) nudE 2872407..2872976 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  QMY43_RS13515 (QMY43_13515) cysQ 2873017..2873844 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QMY43_RS13520 (QMY43_13520) - 2874129..2874890 (-) 762 WP_005496730.1 type II secretion system protein N -
  QMY43_RS13525 (QMY43_13525) - 2874892..2875383 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27620.77 Da        Isoelectric Point: 9.1620

>NTDB_id=833025 QMY43_RS13500 WP_069485175.1 2870779..2871504(+) (comF) [Vibrio parahaemolyticus strain G855]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCGHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=833025 QMY43_RS13500 WP_069485175.1 2870779..2871504(+) (comF) [Vibrio parahaemolyticus strain G855]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGTTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGGTCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATATTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGTACAAGAAATCCAGTCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477