Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QMY17_RS13250 Genome accession   NZ_CP125812
Coordinates   2453286..2454065 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain N3378-3At     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2448286..2459065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS13220 fliH 2448317..2449069 (-) 753 WP_014479782.1 flagellar assembly protein FliH -
  QMY17_RS13225 fliG 2449062..2450078 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  QMY17_RS13230 fliF 2450091..2451688 (-) 1598 Protein_2599 flagellar basal-body MS-ring/collar protein FliF -
  QMY17_RS13235 fliE 2451734..2452054 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  QMY17_RS13240 flgC 2452065..2452517 (-) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  QMY17_RS13245 flgB 2452517..2452906 (-) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  QMY17_RS13250 codY 2453286..2454065 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QMY17_RS13255 hslU 2454105..2455508 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  QMY17_RS13260 clpQ 2455525..2456070 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  QMY17_RS13265 xerC 2456083..2456997 (-) 915 WP_014479777.1 tyrosine recombinase XerC -
  QMY17_RS13270 trmFO 2457065..2458372 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=832951 QMY17_RS13250 WP_003220850.1 2453286..2454065(-) (codY) [Bacillus subtilis strain N3378-3At]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=832951 QMY17_RS13250 WP_003220850.1 2453286..2454065(-) (codY) [Bacillus subtilis strain N3378-3At]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467