Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QLQ05_RS14800 Genome accession   NZ_CP125762
Coordinates   2741682..2742461 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain KRS015     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2736682..2747461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS14770 fliH 2736699..2737451 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  QLQ05_RS14775 fliG 2737444..2738460 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  QLQ05_RS14780 fliF 2738473..2740084 (-) 1612 Protein_2912 flagellar basal-body MS-ring/collar protein FliF -
  QLQ05_RS14785 fliE 2740130..2740450 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  QLQ05_RS14790 flgC 2740461..2740913 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  QLQ05_RS14795 flgB 2740913..2741302 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  QLQ05_RS14800 codY 2741682..2742461 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QLQ05_RS14805 hslU 2742501..2743913 (-) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  QLQ05_RS14810 clpQ 2743921..2744466 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  QLQ05_RS14815 xerC 2744479..2745393 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  QLQ05_RS14820 trmFO 2745461..2746768 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=832717 QLQ05_RS14800 WP_003220850.1 2741682..2742461(-) (codY) [Bacillus subtilis strain KRS015]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=832717 QLQ05_RS14800 WP_003220850.1 2741682..2742461(-) (codY) [Bacillus subtilis strain KRS015]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467