Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   QMZ13_RS05010 Genome accession   NZ_CP125741
Coordinates   933755..934270 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain MS2212     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 928755..939270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ13_RS04995 (QMZ13_04990) - 928867..930684 (-) 1818 WP_410497334.1 motility associated factor glycosyltransferase family protein -
  QMZ13_RS05000 (QMZ13_04995) - 930684..932504 (-) 1821 WP_042635903.1 motility associated factor glycosyltransferase family protein -
  QMZ13_RS05005 (QMZ13_05000) - 932516..933755 (-) 1240 Protein_968 DUF2920 family protein -
  QMZ13_RS05010 (QMZ13_05005) ctsG 933755..934270 (-) 516 WP_002799196.1 type II secretion system protein Machinery gene
  QMZ13_RS05015 (QMZ13_05010) tsaD 934271..935278 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  QMZ13_RS05020 (QMZ13_05015) - 935275..936669 (-) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  QMZ13_RS05025 (QMZ13_05020) dxr 936671..937741 (-) 1071 WP_042635905.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  QMZ13_RS05030 (QMZ13_05025) cdsA 937738..938463 (-) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  QMZ13_RS05035 (QMZ13_05030) - 938472..938810 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=832655 QMZ13_RS05010 WP_002799196.1 933755..934270(-) (ctsG) [Campylobacter jejuni strain MS2212]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=832655 QMZ13_RS05010 WP_002799196.1 933755..934270(-) (ctsG) [Campylobacter jejuni strain MS2212]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942