Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QMA40_RS18930 Genome accession   NZ_CP125661
Coordinates   3706646..3707425 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain BV5     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3677865..3727851 3706646..3707425 within 0


Gene organization within MGE regions


Location: 3677865..3727851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA40_RS18800 (QMA40_18740) dpaB 3678536..3679135 (-) 600 WP_000053596.1 dipicolinate synthase subunit B -
  QMA40_RS18805 (QMA40_18745) dpaA 3679132..3680034 (-) 903 WP_000954735.1 dipicolinic acid synthetase subunit A -
  QMA40_RS18810 (QMA40_18750) - 3680205..3680456 (-) 252 WP_001239756.1 YlmC/YmxH family sporulation protein -
  QMA40_RS18815 (QMA40_18755) - 3680591..3681832 (-) 1242 WP_000592989.1 M16 family metallopeptidase -
  QMA40_RS18820 (QMA40_18760) - 3681919..3682818 (-) 900 WP_000868232.1 polysaccharide deacetylase family protein -
  QMA40_RS18825 (QMA40_18765) pnp 3682973..3685111 (-) 2139 WP_000076754.1 polyribonucleotide nucleotidyltransferase -
  QMA40_RS18830 (QMA40_18770) rpsO 3685272..3685541 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  QMA40_RS18835 (QMA40_18775) ribF 3685642..3686613 (-) 972 WP_000766704.1 bifunctional riboflavin kinase/FAD synthetase -
  QMA40_RS18840 (QMA40_18780) truB 3686657..3687580 (-) 924 WP_000399348.1 tRNA pseudouridine(55) synthase TruB -
  QMA40_RS18845 (QMA40_18785) rbfA 3687667..3688023 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  QMA40_RS18850 (QMA40_18790) - 3688039..3688320 (-) 282 WP_000582363.1 DUF503 domain-containing protein -
  QMA40_RS18855 (QMA40_18795) infB 3688317..3690377 (-) 2061 WP_000036343.1 translation initiation factor IF-2 -
  QMA40_RS18860 (QMA40_18800) - 3690382..3690693 (-) 312 WP_001286524.1 YlxQ family RNA-binding protein -
  QMA40_RS18865 (QMA40_18805) rnpM 3690694..3690966 (-) 273 WP_000071127.1 RNase P modulator RnpM -
  QMA40_RS18870 (QMA40_18810) nusA 3690978..3692084 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  QMA40_RS18875 (QMA40_18815) rimP 3692102..3692572 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  QMA40_RS18880 (QMA40_18820) - 3692909..3697210 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  QMA40_RS18885 (QMA40_18825) - 3697335..3699035 (-) 1701 WP_410491252.1 proline--tRNA ligase -
  QMA40_RS18890 (QMA40_18830) rseP 3699145..3700401 (-) 1257 WP_001090243.1 RIP metalloprotease RseP -
  QMA40_RS18895 (QMA40_18835) dxr 3700419..3701561 (-) 1143 WP_000790375.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  QMA40_RS18900 (QMA40_18840) cdsA 3701585..3702376 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  QMA40_RS18905 (QMA40_18845) uppS 3702394..3703170 (-) 777 WP_000971296.1 isoprenyl transferase -
  QMA40_RS18910 (QMA40_18850) frr 3703256..3703813 (-) 558 WP_000531501.1 ribosome recycling factor -
  QMA40_RS18915 (QMA40_18855) pyrH 3703816..3704538 (-) 723 WP_000042668.1 UMP kinase -
  QMA40_RS18920 (QMA40_18860) tsf 3704605..3705492 (-) 888 WP_001018578.1 translation elongation factor Ts -
  QMA40_RS18925 (QMA40_18865) rpsB 3705596..3706297 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  QMA40_RS18930 (QMA40_18870) codY 3706646..3707425 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QMA40_RS18935 (QMA40_18875) hslU 3707503..3708894 (-) 1392 WP_000550087.1 ATP-dependent protease ATPase subunit HslU -
  QMA40_RS18940 (QMA40_18880) hslV 3708917..3709459 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  QMA40_RS18945 (QMA40_18885) xerC 3709502..3710401 (-) 900 WP_044584806.1 tyrosine recombinase XerC -
  QMA40_RS18950 (QMA40_18890) trmFO 3710467..3711771 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QMA40_RS18955 (QMA40_18895) topA 3711820..3713898 (-) 2079 WP_001286960.1 type I DNA topoisomerase -
  QMA40_RS18960 (QMA40_18900) dprA 3714043..3714912 (-) 870 WP_000818039.1 DNA-processing protein DprA -
  QMA40_RS18965 (QMA40_18905) sucD 3715000..3715902 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  QMA40_RS18970 (QMA40_18910) sucC 3715922..3717082 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  QMA40_RS18975 (QMA40_18915) - 3717277..3718050 (-) 774 WP_001194267.1 ribonuclease HII -
  QMA40_RS18980 (QMA40_18920) ylqF 3718107..3718997 (-) 891 WP_000236702.1 ribosome biogenesis GTPase YlqF -
  QMA40_RS18985 (QMA40_18925) lepB 3719018..3719569 (-) 552 WP_121868055.1 signal peptidase I -
  QMA40_RS18990 (QMA40_18930) rplS 3719671..3720015 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  QMA40_RS18995 (QMA40_18935) trmD 3720162..3720896 (-) 735 WP_000686904.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QMA40_RS19000 (QMA40_18940) rimM 3720896..3721411 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  QMA40_RS19005 (QMA40_18945) - 3721532..3721759 (-) 228 WP_000737401.1 KH domain-containing protein -
  QMA40_RS19010 (QMA40_18950) rpsP 3721774..3722046 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  QMA40_RS19015 (QMA40_18955) ffh 3722148..3723497 (-) 1350 WP_000863460.1 signal recognition particle protein -
  QMA40_RS19020 (QMA40_18960) - 3723510..3723842 (-) 333 WP_000891062.1 putative DNA-binding protein -
  QMA40_RS19025 (QMA40_18965) ftsY 3723976..3724965 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=832304 QMA40_RS18930 WP_000421290.1 3706646..3707425(-) (codY) [Bacillus thuringiensis strain BV5]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=832304 QMA40_RS18930 WP_000421290.1 3706646..3707425(-) (codY) [Bacillus thuringiensis strain BV5]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459