Detailed information NTG0832172

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: U0447_RS03015
• Genome accession: NZ_CP139861
• Coordinates: 585566..586837 (+)
• Length: 423 a.a.
• NCBI ID: WP_050232555.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 16H2017-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 580566..591837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0447_RS02980	-	581628..582056 (-)	429	WP_050232552.1	NUDIX hydrolase	-
U0447_RS02985	-	582058..583125 (-)	1068	WP_050232553.1	site-2 protease family protein	-
U0447_RS02990	-	583144..583614 (-)	471	WP_000257104.1	DUF3013 family protein	-
U0447_RS02995	-	583905..584357 (-)	453	WP_000961810.1	type II toxin-antitoxin system HicB family antitoxin	-
U0447_RS03000	-	584394..584573 (-)	180	WP_001132282.1	type II toxin-antitoxin system HicA family toxin	-
U0447_RS03005	-	584710..584889 (-)	180	WP_001048906.1	hypothetical protein	-
U0447_RS03010	-	585054..585296 (-)	243	WP_050232554.1	hypothetical protein	-
U0447_RS03015	rarA	585566..586837 (+)	1272	WP_050232555.1	replication-associated recombination protein A	Machinery gene
U0447_RS03025	-	587384..588703 (-)	1320	WP_000502555.1	glycoside hydrolase family 32 protein	-
U0447_RS03030	-	588713..590329 (-)	1617	WP_000669743.1	ABC transporter substrate-binding protein	-
U0447_RS03035	-	590358..591248 (-)	891	WP_000797961.1	carbohydrate ABC transporter permease	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 46978.44 Da
• Isoelectric Point: 5.9140

>NTDB_id=832172 U0447_RS03015 WP_050232555.1 585566..586837(+) (rarA) [Streptococcus pneumoniae strain 16H2017-2]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALVQRKEAIDHLRKI

Nucleotide

• Length: 1272 bp

>NTDB_id=832172 U0447_RS03015 WP_050232555.1 585566..586837(+) (rarA) [Streptococcus pneumoniae strain 16H2017-2]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACCTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTTCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTAAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGTTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (42-144)

• AAA C-terminal domain (AAA_assoc_2) (173-251)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-416)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	58.191	96.69	0.563