Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QLX69_RS04855 Genome accession   NZ_CP125629
Coordinates   978248..979093 (-) Length   281 a.a.
NCBI ID   WP_283192047.1    Uniprot ID   -
Organism   Limosilactobacillus oris strain BSLO1801     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 973248..984093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX69_RS04835 (QLX69_04835) - 974051..974527 (-) 477 WP_260901519.1 nucleoside 2-deoxyribosyltransferase -
  QLX69_RS04840 (QLX69_04840) - 974559..974720 (-) 162 WP_260901521.1 hypothetical protein -
  QLX69_RS04845 (QLX69_04845) - 974717..975601 (-) 885 WP_283192045.1 alpha/beta hydrolase -
  QLX69_RS04850 (QLX69_04850) - 975647..977956 (-) 2310 WP_283192046.1 ATP-binding protein -
  QLX69_RS04855 (QLX69_04855) endA 978248..979093 (-) 846 WP_283192047.1 DNA/RNA non-specific endonuclease Machinery gene
  QLX69_RS04860 (QLX69_04860) - 979209..980594 (-) 1386 WP_283192048.1 amino acid permease -
  QLX69_RS04865 (QLX69_04865) - 980868..982052 (-) 1185 WP_283192049.1 LPXTG cell wall anchor domain-containing protein -
  QLX69_RS04870 (QLX69_04870) - 982159..983934 (-) 1776 WP_283192050.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30866.20 Da        Isoelectric Point: 10.5215

>NTDB_id=832000 QLX69_RS04855 WP_283192047.1 978248..979093(-) (endA) [Limosilactobacillus oris strain BSLO1801]
MYRIKKRLWQTILALGLVLLFGGFINQSNGSNTAWAQGIQRLVSWGGNYHSGSQQSLPPTKEQAESVLTPAVRQQLGDSI
SWNGSGAFIVNNNRPQLNANISSAPYAVNLRDQQGRAWRGDAWLNRTTRQYRSRNETGNGATSWRPAGFLQASNLTGSYR
HAYDRGHLLGYALVGGINRFDASESNPANIATQTAWANEARSSTSTGQNYYEGLVRKALDRGKQVRYRVTDIYNGNDVVP
AGAHIEALSSDGSLSFNVFVPNVQRNIKINYATGAVTQLNN

Nucleotide


Download         Length: 846 bp        

>NTDB_id=832000 QLX69_RS04855 WP_283192047.1 978248..979093(-) (endA) [Limosilactobacillus oris strain BSLO1801]
ATGTATCGAATTAAAAAGAGACTCTGGCAAACCATCCTCGCCCTGGGGTTGGTACTACTGTTCGGTGGTTTCATCAACCA
GTCCAACGGCAGTAATACCGCCTGGGCGCAGGGCATCCAGCGGCTGGTCTCCTGGGGTGGTAATTACCACAGCGGGAGTC
AGCAAAGCCTACCGCCAACCAAGGAGCAGGCGGAGTCAGTACTAACACCGGCCGTCCGCCAGCAGTTAGGGGACTCTATC
AGTTGGAATGGTTCTGGTGCCTTCATCGTCAACAACAACCGGCCGCAGCTGAACGCTAATATTAGCAGTGCACCATACGC
CGTTAATCTCCGTGACCAGCAGGGCCGGGCATGGCGGGGGGATGCCTGGCTTAACCGCACCACTCGCCAATACCGCAGCC
GGAATGAAACTGGTAACGGCGCTACTAGCTGGCGCCCAGCAGGATTTTTACAGGCCAGCAACCTGACTGGAAGTTACCGG
CACGCCTATGACCGGGGGCACTTACTCGGCTACGCCCTAGTCGGGGGGATTAATCGTTTTGACGCCTCCGAATCTAACCC
CGCCAACATCGCCACGCAGACCGCCTGGGCCAATGAAGCCCGCAGTTCGACCTCAACCGGGCAAAACTACTATGAAGGGC
TCGTCCGCAAAGCGCTTGACCGGGGTAAGCAGGTGCGGTACCGGGTCACTGATATATACAACGGTAATGATGTCGTGCCA
GCGGGCGCTCATATTGAGGCGCTCTCCAGCGACGGTAGCTTATCTTTCAATGTCTTCGTGCCGAATGTGCAACGAAATAT
TAAAATTAATTACGCCACCGGGGCAGTAACACAATTGAATAACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(100-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

57.692

83.274

0.48
  endA Streptococcus pneumoniae D39

57.692

83.274

0.48
  endA Streptococcus pneumoniae R6

57.692

83.274

0.48
  endA Streptococcus pneumoniae TIGR4

57.692

83.274

0.48